Evidence map›Paper›PMID 20221430›Full record

ArticlePloS one2010

Array-based FMR1 sequencing and deletion analysis in patients with a fragile X syndrome-like phenotype.

Stephen C Collins, Brad Coffee, Paul J Benke, Elizabeth Berry-Kravis, Fred Gilbert, Ben Oostra, Dicky Halley, Michael E Zwick, David J Cutler, Stephen T Warren

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Therapeutic strategies in fragile X syndrome: dysregulated mGluR signaling and beyond.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2012
    Review
  13. Article
  14. A nonsense mutation in FMR1 causing fragile X syndrome.European journal of human genetics : EJHG · 2011
    Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Stephen C CollinsDepartment of Human Genetics, Emory University School of Medicine, Atlanta, Georgia, United States of America.
Brad Coffee
Paul J Benke
Elizabeth Berry-Kravis
Fred Gilbert
Ben Oostra
Dicky Halley
Michael E Zwick
David J Cutler
Stephen T Warren
Emory University · USErasmus University Rotterdam · NLCornell University · USJoe DiMaggio Children's Hospital · USRush University Medical Center · US

Funding

UNDERSTANDING FXTAS AMONG MALES WITH THE FMR1 PREMUTATIONP30HD024064 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI TOLIAS, KIMBERLY R · 1988 to 2013
$29.4M
MOLECULAR CLONING OF THE FRAGILE X SITER01HD020521 · NICHD · EMORY UNIVERSITY · PI WARREN, STEPHEN T. · 1986 to 2011
$2.8M
MOLECULAR CLONING OF THE FRAGILE X SITER37HD020521 · NICHD · EMORY UNIVERSITY · PI WARREN, STEPHEN T. · 1996 to 2005
$1.7M
NICHD NIH HHS HD020521NICHD NIH HHS HD024064NICHD NIH HHS P30 HD024064NICHD NIH HHS R01 HD020521NICHD NIH HHS R37 HD020521
6 · The paper itself

Abstract

backgroundFragile X syndrome (FXS) is caused by loss of function mutations in the FMR1 gene. Trinucleotide CGG-repeat expansions, resulting in FMR1 gene silencing, are the most common mutations observed at this locus. Even though the repeat expansion mutation is a functional null mutation, few conventional mutations have been identified at this locus, largely due to the clinical laboratory focus on the repeat tract. METHODOLOGY/PRINCIPAL

findingsTo more thoroughly evaluate the frequency of conventional mutations in FXS-like patients, we used an array-based method to sequence FMR1 in 51 unrelated males exhibiting several features characteristic of FXS but with normal CGG-repeat tracts of FMR1. One patient was identified with a deletion in FMR1, but none of the patients were found to have other conventional mutations. CONCLUSIONS/SIGNIFICANCE: These data suggest that missense mutations in FMR1 are not a common cause of the FXS phenotype in patients who have normal-length CGG-repeat tracts. However, screening for small deletions of FMR1 may be of clinically utility.

Indexed as

Gene DeletionFragile X Messenger Ribonucleoprotein 1Fragile X SyndromeHumansMaleMutationMutation, MissenseOligonucleotide Array Sequence AnalysisPhenotypePolymorphism, GeneticPolymorphism, Single NucleotideSequence Analysis, DNATrinucleotide Repeat ExpansionFMR1 protein, humanFragile X Messenger Ribonucleoprotein 1

Identifiers

PMID20221430
PMCPMC2832695
OpenAlexW1984754112

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.