ArticlePlant signaling & behavior2010
The Arabidopsis translatome cell-specific mRNA atlas: Mining suberin and cutin lipid monomer biosynthesis genes as an example for data application.
Article in Plant signaling & behavior, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
11 citing papers in PubMed, 27 citations in OpenAlex.
- Citrus phloem specific transcriptional profiling through the development of a citrus tristeza virus expressed translating ribosome affinity purification system.Plant methods · 2025Article
- BIG enhances Arg/N-degron pathway-mediated protein degradation to regulate Arabidopsis hypoxia responses and suberin deposition.The Plant cell · 2024Article
- Investigation of Salt Tolerance Mechanisms Across a Root Developmental Gradient in Almond Rootstocks.Frontiers in plant science · 2020Article
- Ribosome profiling reveals changes in translational status of soybean transcripts during immature cotyledon development.PloS one · 2018Article
- Emerging Roles and Landscape of Translating mRNAs in Plants.Frontiers in plant science · 2017Review
- Proteasome targeting of proteins in Arabidopsis leaf mesophyll, epidermal and vascular tissues.Frontiers in plant science · 2015Article
- Physiological basis of tolerance to complete submergence in rice involves genetic factors in addition to the SUB1 gene.AoB PLANTS · 2014Article
- Extensive translational regulation of gene expression in an allopolyploid (Glycine dolichocarpa).The Plant cell · 2014Article
- Modulation of inflammatory gene expression by the ribotoxin deoxynivalenol involves coordinate regulation of the transcriptome and translatome.Toxicological sciences : an official journal of the Society of Toxicology · 2013Article
- Waterproofing crops: effective flooding survival strategies.Plant physiology · 2012Review
- Crosstalk in cellular signaling: background noise or the real thing?Developmental cell · 2011Review
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Authors and funding
2 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Plants consist of distinct cell types distinguished by position, morphological features and metabolic activities. We recently developed a method to extract cell-type specific mRNA populations by immunopurification of ribosome-associated mRNAs. Microarray profiles of 21 cell-specific mRNA populations from seedling roots and shoots comprise the Arabidopsis Translatome dataset. This gene expression atlas provides a new tool for the study of cell-specific processes. Here we provide an example of how genes involved in a pathway limited to one or few cell-types can be further characterized and new candidate genes can be predicted. Cells of the root endodermis produce suberin as an inner barrier between the cortex and stele, whereas the shoot epidermal cells form cutin as a barrier to the external environment. Both polymers consist of fatty acid derivates, and share biosynthetic origins. We use the Arabidopsis Translatome dataset to demonstrate the significant cell-specific expression patterns of genes involved in those biosynthetic processes and suggest new candidate genes in the biosynthesis of suberin and cutin.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.