Evidence map›Paper›PMID 20220157›Full record

ArticleJournal of clinical microbiology2010

New polymorphic microsatellite markers able to distinguish among Candida parapsilosis sensu stricto isolates.

Raquel Sabino, Paula Sampaio, Laura Rosado, David A Stevens, Karl V Clemons, Célia Pais

Open access · greenAbstract readComparative StudyEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed, 1 pooled it
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 1 synthesis or guideline pooled it, 89 citations in OpenAlex.

  1. Pooled it
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  9. A cluster ofAntimicrobial stewardship & healthcare epidemiology : ASHE · 2024
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  10. Frontiers in cellular and infection microbiology · 2024
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  11. Antifungal Resistance and Genotyping of ClinicalJournal of fungi (Basel, Switzerland) · 2023
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  12. The first established microsatellite markers to distinguishJournal of clinical microbiology · 2023
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  13. The Gastrointestinal Tract Is Pinpointed as a Reservoir ofJournal of fungi (Basel, Switzerland) · 2023
    Article
  14. Article
  15. Genotypic Diversity ofJournal of fungi (Basel, Switzerland) · 2022
    Article
  16. Journal of fungi (Basel, Switzerland) · 2022
    Article
  17. Evolution of Fluconazole Resistance Mechanisms and Clonal Types ofAntimicrobial agents and chemotherapy · 2022
    Article
  18. Characteristics of Biofilms Formed byJournal of fungi (Basel, Switzerland) · 2022
    Article
  19. Fluconazole-resistantFrontiers in fungal biology · 2022
    Review
  20. Observational
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Raquel SabinoCentre of Molecular and Environmental Biology, Department of Biology, University of Minho, Braga, Portugal.
Paula Sampaio
Laura Rosado
David A Stevens
Karl V Clemons
Célia Pais
University of Minho · PTNational Institute of Health Dr. Ricardo Jorge · PTSanta Clara Valley Medical Center · USStanford University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Among the Candida species causing bloodstream infections, Candida parapsilosis is one of the most frequently isolated. The objective of the present work was the identification of new microsatellite loci able to distinguish among C. parapsilosis isolates. DNA sequences with trinucleotide repeats were selected from the C. parapsilosis genome database. PCR primer sets flanking the microsatellite repeats were designed and tested with 20 independent isolates. On the basis of the amplification efficiency, specificity, and observed polymorphism, four of the sequences were selected for strain typing. Two hundred thirty-three independent C. parapsilosis sensu stricto isolates were genotyped by using these markers. The polymorphic loci exhibited from 20 to 42 alleles and 39 to 92 genotypes. In a multiplex analysis, 192 genotypes were obtained and the combined discriminatory power of the four microsatellites was 0.99. Reproducibility was demonstrated by submission of subcultures of 4 isolates each, in triplicate, interspersed with unique numbers among a group of 30 isolates for blind testing. Comparison of the genotypes obtained by microsatellite analysis and those obtained by randomly amplified polymorphic DNA analysis, restriction fragment length polymorphism analysis, and internal transcribed sequence grouping was performed and showed that the microsatellite method could distinguish individual isolates; none of the other methods could do that. Related species, C. orthopsilosis and C. metapsilosis, were not confused with C. parapsilosis sensu stricto. These new microsatellites are a valuable tool for use for the differentiation of C. parapsilosis sensu stricto strains, vital in epidemiology to answer questions of strain relatedness and determine pathways of transmission.

Indexed as

Microsatellite RepeatsPolymorphism, GeneticAllelesCandidaCandidiasisDNA FingerprintingDNA PrimersGenotypeHumansMycological Typing TechniquesRandom Amplified Polymorphic DNA TechniqueReproducibility of ResultsSensitivity and SpecificityDNA Primers

Identifiers

PMID20220157
PMCPMC2863883
OpenAlexW2171653656

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.