Evidence map›Paper›PMID 20219921›Full record

ArticleJournal of virology2010

5' to 3' mRNA decay factors colocalize with Ty1 gag and human APOBEC3G and promote Ty1 retrotransposition.

James A Dutko, Alison E Kenny, Eric R Gamache, M Joan Curcio

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 62 citations in OpenAlex.

  1. Review
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  3. Article
  4. Review
  5. Article
  6. RNA Binding Properties of the Ty1 LTR-Retrotransposon Gag Protein.International journal of molecular sciences · 2021
    Article
  7. A Forward Genetic Approach to Mapping aG3 (Bethesda, Md.) · 2020
    Article
  8. Review
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  14. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

James A DutkoLaboratory of Molecular Genetics, Wadsworth Center, University at Albany, Albany, NY 12201-2002, USA.
Alison E Kenny
Eric R Gamache
M Joan Curcio
Laboratory of Molecular Genetics · PLWadsworth Center · US

Funding

REGULATION OF RETROTRANSPOSITION IN S. CEREVISIAER01GM052072 · NIGMS · WADSWORTH CENTER · PI CURCIO, M JOAN · 2000 to 2013
$3.3M
Effect of APOBEC3G on retroviruses and retrotransposonsR01AI065301 · NIAID · DUKE UNIVERSITY · PI CULLEN, BRYAN R. · 2005 to 2009
$1.7M
REGULATION OF RETROTRANSPOSITION IN S CEREVISIAER29GM052072 · NIGMS · WADSWORTH CENTER · PI CURCIO, M JOAN · 1995 to 1999
–
NIAID NIH HHS AI065301NIAID NIH HHS R01 AI065301NIGMS NIH HHS GM52072NIGMS NIH HHS R01 GM052072NIGMS NIH HHS R29 GM052072
6 · The paper itself

Abstract

The genomic RNA of retroviruses and retrovirus-like transposons must be sequestered from the cellular translational machinery so that it can be packaged into viral particles. Eukaryotic mRNA processing bodies (P bodies) play a central role in segregating cellular mRNAs from the translational machinery for storage or decay. In this work, we provide evidence that the RNA of the Saccharomyces cerevisiae Ty1 retrotransposon is packaged into virus-like particles (VLPs) in P bodies. Ty1 RNA is translationally repressed, and Ty1 Gag, the capsid and RNA binding protein, accumulates in discrete cytoplasmic foci, a subset of which localize to P bodies. Human APOBEC3G, a potent Ty1 restriction factor that is packaged into Ty1 VLPs via an interaction with Gag, also localizes to P bodies. The association of APOBEC3G with P bodies does not require Ty1 element expression, suggesting that P-body localization of APOBEC3G and Ty1 Gag precedes VLP assembly. Additionally, we report that two P-body-associated 5' to 3' mRNA decay pathways, deadenylation-dependent mRNA decay (DDD) and nonsense-mediated decay (NMD), stimulate Ty1 retrotransposition. The additive contributions of DDD and NMD explain the strong requirement for general 5' to 3' mRNA degradation factors Dcp1, Dcp2, and Xrn1 in Ty1 retromobility. 5' to 3' decay factors act at a posttranslational step in retrotransposition, and Ty1 RNA packaging into VLPs is abolished in the absence of the 5' to 3' exonuclease Xrn1. Together, the results suggest that VLPs assemble in P bodies and that 5' to 3' mRNA decay is essential for the packaging of Ty1 RNA in VLPs.

Indexed as

Chromosome MappingRecombination, GeneticRNA StabilityAPOBEC-3G DeaminaseCytidine DeaminaseHumansProtein BindingRetroelementsRibonucleasesAPOBEC-3G DeaminaseAPOBEC3G protein, humanCytidine DeaminaseRetroelementsRibonucleases

Identifiers

PMID20219921
PMCPMC2863804
OpenAlexW2131194288

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.