ArticleBioinformatics (Oxford, England)2010
PanCGHweb: a web tool for genotype calling in pangenome CGH data.
Article in Bioinformatics (Oxford, England), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
10 citing papers in PubMed.
- Molecular insights into pangenome localization and constructs design for Hemophilus influenza vaccine.Scientific reports · 2025Article
- Comparative Genome Analysis ofFrontiers in microbiology · 2019Article
- PGAP-X: extension on pan-genome analysis pipeline.BMC genomics · 2018Article
- PGAweb: A Web Server for Bacterial Pan-Genome Analysis.Frontiers in microbiology · 2018Article
- The bacterial pangenome as a new tool for analysing pathogenic bacteria.New microbes and new infections · 2015Article
- A brief review of software tools for pangenomics.Genomics, proteomics & bioinformatics · 2015Review
- Genotype-phenotype matching analysis of 38 Lactococcus lactis strains using random forest methods.BMC microbiology · 2013Article
- PGAP: pan-genomes analysis pipeline.Bioinformatics (Oxford, England) · 2012Article
- Systems solutions by lactic acid bacteria: from paradigms to practice.Microbial cell factories · 2011Review
- Genome-scale diversity and niche adaptation analysis of Lactococcus lactis by comparative genome hybridization using multi-strain arrays.Microbial biotechnology · 2011Article
Corrections and comments
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Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
unlabelledA pangenome is the total of genes present in strains of the same species. Pangenome microarrays allow determining the genomic content of bacterial strains more accurately than conventional comparative genome hybridization microarrays. PanCGHweb is the first tool that effectively calls genotype based on pangenome microarray data. AVAILABILITY: PanCGHweb, the web tool is accessible from: http://bamics2.cmbi.ru.nl/websoftware/pancgh/.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.