ArticlePlant physiology2010
VisuaLRTC: a new view on lateral root initiation by combining specific transcriptome data sets.
Article in Plant physiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
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Who cites it
28 citing papers in PubMed.
- Synthetically derived BiAux modulates auxin co-receptor activity to stimulate lateral root formation.Plant physiology · 2024Article
- Trehalose-6-phosphate signaling regulates lateral root formation in Arabidopsis thaliana.Proceedings of the National Academy of Sciences of the United States of America · 2023Article
- Leaf vein patterning is regulated by the aperture of plasmodesmata intercellular channels.PLoS biology · 2022Article
- The Same against Many: AtCML8, a CaInternational journal of molecular sciences · 2021Article
- Reconstruction of lateral root formation through single-cell RNA sequencing reveals order of tissue initiation.Molecular plant · 2021Article
- Lateral Root Initiation and the Analysis of Gene Function Using Genome Editing with CRISPR inGenes · 2021Review
- Review
- Article
- Nitrate-responsive OBP4-XTH9 regulatory module controls lateral root development in Arabidopsis thaliana.PLoS genetics · 2019Article
- The auxin receptor TIR1 homolog (PagFBL 1) regulates adventitious rooting through interactions with Aux/IAA28 in Populus.Plant biotechnology journal · 2019Article
- Cell Type-Specific Transcriptomics of Lateral Root Formation and Plasticity.Frontiers in plant science · 2019Review
- NAC Transcription Factors ANAC087 and ANAC046 Control Distinct Aspects of Programmed Cell Death in the Arabidopsis Columella and Lateral Root Cap.The Plant cell · 2018Article
- A Conserved Core of Programmed Cell Death Indicator Genes Discriminates Developmentally and Environmentally Induced Programmed Cell Death in Plants.Plant physiology · 2015Article
- Expanding the repertoire of secretory peptides controlling root development with comparative genome analysis and functional assays.Journal of experimental botany · 2015Article
- Cytokinin as a positional cue regulating lateral root spacing in Arabidopsis.Journal of experimental botany · 2015Article
- NEMATIC: a simple and versatile tool for the in silico analysis of plant-nematode interactions.Molecular plant pathology · 2014Article
- The Emerging Role of Reactive Oxygen Species Signaling during Lateral Root Development.Plant physiology · 2014Article
- Omics and modelling approaches for understanding regulation of asymmetric cell divisions in arabidopsis and other angiosperm plants.Annals of botany · 2014Review
- Systems approaches to study root architecture dynamics.Frontiers in plant science · 2013Review
- Root systems biology: integrative modeling across scales, from gene regulatory networks to the rhizosphere.Plant physiology · 2013Review
Corrections and comments
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Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Lateral root initiation and development has been increasingly studied over the last two decades. This postembryonic organogenic process guarantees the spatial development and plasticity of the root system in response to environmental cues and is crucial for the plant's growth and development. Several independent large-scale transcriptome studies in different species resulted in a wealth of data that can be instructive to understand this process at the molecular level. Here, we present an easy and flexible spreadsheet tool, called Visual Lateral Root Transcriptome Compendium, that combines publicly available data sets involved in Arabidopsis (Arabidopsis thaliana) lateral root development and links them with additional information on tissue-specific expression and cell cycle involvement, thus allowing the extraction of novel information from existing data sets in a visual and user-friendly manner. We believe that this tool will be valuable not only for root biologists but also for a broader range of scientists as it enables a fast indication of the potential involvement of a given gene during de novo organogenesis.
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