Evidence map›Paper›PMID 20215468›Full record

ArticleGenetics2010

Dominant mutations in the late 40S biogenesis factor Ltv1 affect cytoplasmic maturation of the small ribosomal subunit in Saccharomyces cerevisiae.

Claire A Fassio, Brett J Schofield, Robert M Seiser, Arlen W Johnson, Deborah E Lycan

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
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  10. Structural Heterogeneity in Pre-40S Ribosomes.Structure (London, England : 1993) · 2017
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Claire A FassioBiochemistry and Molecular Biology Program, Biology Department, Lewis and Clark College, 0615 SW Palatine Hill Rd., Portland, OR 97219, USA.
Brett J Schofield
Robert M Seiser
Arlen W Johnson
Deborah E Lycan
Lewis & Clark College · USRoosevelt University · USThe University of Texas at Austin · US

Funding

MRNA DEGRADATION AND TRANSLATION CONTROL IN YEASTR01GM053655 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI JOHNSON, ARLEN W · 1995 to 2017
$5.1M
The ankyrin protein Yarl in yeast stress responseR15GM061643 · NIGMS · LEWIS AND CLARK COLLEGE · PI LYCAN, DEBORAH E · 2002 to 2011
$601k
NIGMS NIH HHS GM-061643-02NIGMS NIH HHS R01 GM053655NIGMS NIH HHS R01 GM53655NIGMS NIH HHS R15 GM061643
6 · The paper itself

Abstract

In eukaryotes, 40S and 60S ribosomal subunits are assembled in the nucleus from rRNAs and ribosomal proteins, exported as premature complexes, and processed in final maturation steps in the cytoplasm. Ltv1 is a conserved 40S ribosome biogenesis factor that interacts with pre-40S complexes in vivo and is proposed to function in yeast in nuclear export. Cells lacking LTV1 grow slowly and are significantly impaired in mature 40S subunit production. Here we show that mutation or deletion of a putative nuclear export sequence in LTV1 is strongly dominant negative, but the protein does not accumulate in the nucleus, as expected for a mutation affecting export. In fact, most of the mutant protein is cytoplasmic and associated with pre-40S subunits. Cells expressing mutant Ltv1 have a 40S biogenesis defect, accumulate 20S rRNA in the cytoplasm as detected by FISH, and retain the late-acting biogenesis factor Tsr1 in the cytoplasm. Finally, overexpression of mutant Ltv1 is associated with nuclear retention of 40S subunit marker proteins, RpS2-GFP and RpS3-GFP. We suggest that the proximal consequence of these LTV1 mutations is inhibition of the cytoplasmic maturation of 40S subunits and that nuclear retention of pre-40S subunits is a downstream consequence of the failure to release and recycle critical factors back to the nucleus.

Indexed as

Amino Acid SequenceCell NucleusCytoplasmGenes, DominantMolecular Sequence DataMutant ProteinsMutationProtein TransportRibosome Subunits, Small, EukaryoticRNA, FungalSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsLTV1 protein, S cerevisiaeMutant ProteinsRNA, FungalSaccharomyces cerevisiae Proteins

Identifiers

PMID20215468
PMCPMC2870955
OpenAlexW2061240146

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.