ArticleGenome biology2010
XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments.
Article in Genome biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
13 citing papers in PubMed.
- MOLGENIS research: advanced bioinformatics data software for non-bioinformaticians.Bioinformatics (Oxford, England) · 2019Article
- Genetic variation in neurodegenerative diseases and its accessibility in the model organism Caenorhabditis elegans.Human genomics · 2017Review
- WormQTLHD--a web database for linking human disease to natural variation data in C. elegans.Nucleic acids research · 2014Article
- Systems genetics in "-omics" era: current and future development.Theory in biosciences = Theorie in den Biowissenschaften · 2013Review
- WormQTL--public archive and analysis web portal for natural variation data in Caenorhabditis spp.Nucleic acids research · 2013Article
- VarioML framework for comprehensive variation data representation and exchange.BMC bioinformatics · 2012Article
- xQTL workbench: a scalable web environment for multi-level QTL analysis.Bioinformatics (Oxford, England) · 2012Article
- Bioinformatics tools and database resources for systems genetics analysis in mice--a short review and an evaluation of future needs.Briefings in bioinformatics · 2012Review
- Using the Phenogen website for 'in silico' analysis of morphine-induced analgesia: identifying candidate genes.Addiction biology · 2011Article
- OntoCAT--simple ontology search and integration in Java, R and REST/JavaScript.BMC bioinformatics · 2011Article
- The MOLGENIS toolkit: rapid prototyping of biosoftware at the push of a button.BMC bioinformatics · 2010Article
- The gel electrophoresis markup language (GelML) from the Proteomics Standards Initiative.Proteomics · 2010Article
- SYSGENET: a meeting report from a new European network for systems genetics.Mammalian genome : official journal of the International Mammalian Genome Society · 2010Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
20 authors.
Funding
Abstract
We present an extensible software model for the genotype and phenotype community, XGAP. Readers can download a standard XGAP (http://www.xgap.org) or auto-generate a custom version using MOLGENIS with programming interfaces to R-software and web-services or user interfaces for biologists. XGAP has simple load formats for any type of genotype, epigenotype, transcript, protein, metabolite or other phenotype data. Current functionality includes tools ranging from eQTL analysis in mouse to genome-wide association studies in humans.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.