Evidence map›Paper›PMID 20214793›Full record

ArticleBMC genomics2010

Transcriptome analysis of reproductive tissue and intrauterine developmental stages of the tsetse fly (Glossina morsitans morsitans).

Geoffrey M Attardo, José Mc Ribeiro, Yineng Wu, Matthew Berriman, Serap Aksoy

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Tsetse fly microbiota: form and function.Frontiers in cellular and infection microbiology · 2013
    Review
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Geoffrey M AttardoDepartment of Epidemiology and Public Health, Yale University School of Medicine, New Haven, CT, USA.
José Mc Ribeiro
Yineng Wu
Matthew Berriman
Serap Aksoy
Yale University · USNational Institutes of Health · USWellcome Sanger Institute · GB

Funding

Vector-Borne Diseases: Biology Of Vector Host RelationshipZIAAI000810 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI RIBEIRO, JOSE · 2009 to 2025
$20.8M
Molecular Aspects of Tsetse and Trypanosome TransmissionR01AI051584 · NIAID · YALE UNIVERSITY · PI AKSOY, SERAP · 2003 to 2013
$4.3M
Tsetse Fecundity Reduction for Trypanosomiasis ControlR01AI081774 · NIAID · YALE UNIVERSITY · PI AKSOY, SERAP · 2009 to 2013
$2.0M
Tsetse-Trypanosome InteractionsR21AI076879 · NIAID · YALE UNIVERSITY · PI AKSOY, SERAP · 2008 to 2009
$454k
Molecular Analysis of Tsetse Fly ReproductionF32GM077964 · NIGMS · YALE UNIVERSITY · PI ATTARDO, GEOFFREY M · 2006 to 2007
$95k
Intramural NIH HHSNIAID NIH HHS AI081774NIAID NIH HHS AI51584NIAID NIH HHS R01 AI081774NIAID NIH HHS R21 AI076879NIGMS NIH HHS F32 GM077964
6 · The paper itself

Abstract

backgroundTsetse flies, vectors of African trypanosomes, undergo viviparous reproduction (the deposition of live offspring). This reproductive strategy results in a large maternal investment and the deposition of a small number of progeny during a female's lifespan. The reproductive biology of tsetse has been studied on a physiological level; however the molecular analysis of tsetse reproduction requires deeper investigation. To build a foundation from which to base molecular studies of tsetse reproduction, a cDNA library was generated from female tsetse (Glossina morsitans morsitans) reproductive tissues and the intrauterine developmental stages. 3438 expressed sequence tags were sequenced and analyzed.

resultsAnalysis of a nonredundant catalogue of 1391 contigs resulted in 520 predicted proteins. 475 of these proteins were full length. We predict that 412 of these represent cytoplasmic proteins while 57 are secreted. Comparison of these proteins with other tissue specific tsetse cDNA libraries (salivary gland, fat body/milk gland, and midgut) identified 51 that are unique to the reproductive/immature cDNA library. 11 unique proteins were homologous to uncharacterized putative proteins within the NR database suggesting the identification of novel genes associated with reproductive functions in other insects (hypothetical conserved). The analysis also yielded seven putative proteins without significant homology to sequences present in the public database (unknown genes). These proteins may represent unique functions associated with tsetse's viviparous reproductive cycle. RT-PCR analysis of hypothetical conserved and unknown contigs was performed to determine basic tissue and stage specificity of the expression of these genes.

conclusionThis paper identifies 51 putative proteins specific to a tsetse reproductive/immature EST library. 11 of these proteins correspond to hypothetical conserved genes and 7 proteins are tsetse specific.

Indexed as

Gene Expression ProfilingAmino Acid SequenceAnimalsCluster AnalysisComparative Genomic HybridizationContig MappingExpressed Sequence TagsFemaleGene Expression Regulation, DevelopmentalGene LibraryGenes, InsectLife Cycle StagesMolecular Sequence DataOvaryPhylogenyReproduction

Identifiers

PMID20214793
PMCPMC2846916
OpenAlexW2110749907

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.