Evidence map›Paper›PMID 20213159›Full record

ArticleOrigins of life and evolution of the biosphere : the journal of the International Society for the Study of the Origin of Life2010

Influence of montmorillonite on nucleotide oligomerization reactions: a molecular dynamics study.

Damien C Mathew, Zaida Luthey-Schulten

Abstract read
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In one paragraph

Article in Origins of life and evolution of the biosphere : the journal of the International Society for the Study of the Origin of Life, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Clays and the Origin of Life: The Experiments.Life (Basel, Switzerland) · 2022
    Review
  5. How do Nucleotides Adsorb Onto Clays?Life (Basel, Switzerland) · 2018
    Article
  6. Systems protobiology: origin of life in lipid catalytic networks.Journal of the Royal Society, Interface · 2018
    Review
  7. Review
  8. Possible origin of life between mica sheets: does life imitate mica?Journal of biomolecular structure & dynamics · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Damien C MathewSchool of Chemical Sciences, University of Illinois, 600 S Mathews Ave., MC-712, Box 68-6, Urbana, IL 61801, USA. dmathew2@illinois.edu
Zaida Luthey-Schulten

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We investigate a proposed origins of life scenario involving the clay montmorillonite and its catalytic role in forming oligonucleotides from activated mononucleotides. Clay and mineral surfaces are important for concentrating the reactants and for promoting nucleotide polymerization reactions. Using classical molecular dynamics methods we provide atomic details of reactant conformations prior to polynucleotide formation, lending insight into previously reported experimental observations of this phenomenon. The simulations clarify the catalytic role of metal ions, demonstrate that reactions leading to correct linkages take place primarily in the interlayer, and explain the observed sequence selectivity in the elongation of the chain. The study comparing reaction probabilities involving L- and D-chiral forms of the reactants has found enhancement of homochiral over heterochiral products when catalyzed by montmorillonite.

Indexed as

BentoniteCatalysisEvolution, ChemicalModels, ChemicalMolecular Dynamics SimulationMolecular StructureNucleotidesOligonucleotidesOrigin of LifeSurface PropertiesBentoniteNucleotidesOligonucleotides

Identifiers

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.