ArticleNucleic acids research2010
GeneDesign 3.0 is an updated synthetic biology toolkit.
Article in Nucleic acids research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
31 citing papers in PubMed.
- Building synthetic chromosomes one yeast at a time: insights from Sc2.0.Nature biotechnology · 2025Article
- Genetic Characterization of 128 Chinese Individuals with Neurodevelopmental Disorders via Whole-Exome Sequencing.Developmental neuroscience · 2025Article
- Guidelines in the Preparation of Fully Synthetic, Human Single-Domain Antibody Phage Display Libraries.Antibodies (Basel, Switzerland) · 2025Article
- Design and structure of overlapping regions in PCA via deep learning.Synthetic and systems biotechnology · 2025Article
- Dsembler - DNA Assembly Designer: A Tool for Facilitating Assembly of Oligomers.Journal of microbiology and biotechnology · 2025Article
- BAC-browser: the tool for synthetic biology.BMC bioinformatics · 2025Article
- Gene synthesis design: a pythonic approach.PeerJ · 2024Article
- Context-dependent neocentromere activity in synthetic yeast chromosomeCell genomics · 2023Article
- Pervasive RNA folding is crucial for narnavirus genome maintenance.Proceedings of the National Academy of Sciences of the United States of America · 2023Article
- Development of a physiologically relevant and easily scalable LUHMES cell-based model of G2019S LRRK2-driven Parkinson's disease.Disease models & mechanisms · 2021Article
- Beyond natural: synthetic expansions of botanical form and function.The New phytologist · 2020Review
- A combinatorial approach to synthetic transcription factor-promoter combinations for yeast strain engineering.Yeast (Chichester, England) · 2018Article
- Engineering biological systems using automated biofoundries.Metabolic engineering · 2017Review
- Genome Partitioner: A web tool for multi-level partitioning of large-scale DNA constructs for synthetic biology applications.PloS one · 2017Article
- Molecular Cloning Designer Simulator (MCDS): All-in-one molecular cloning and genetic engineering design, simulation and management software for complex synthetic biology and metabolic engineering projects.Metabolic engineering communications · 2016Article
- Exploiting members of the BAHD acyltransferase family to synthesize multiple hydroxycinnamate and benzoate conjugates in yeast.Microbial cell factories · 2016Article
- Investigation of Proposed Ladderane Biosynthetic Genes from Anammox Bacteria by Heterologous Expression in E. coli.PloS one · 2016Article
- YeastFab: the design and construction of standard biological parts for metabolic engineering in Saccharomyces cerevisiae.Nucleic acids research · 2015Article
- qPCRTag Analysis--A High Throughput, Real Time PCR Assay for Sc2.0 Genotyping.Journal of visualized experiments : JoVE · 2015Article
- Active site and laminarin binding in glycoside hydrolase family 55.The Journal of biological chemistry · 2015Article
Corrections and comments
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Authors and funding
5 authors.
Funding
Abstract
GeneDesign is a set of web applications that provides public access to a nucleotide manipulation pipeline for synthetic biology. The server is public and freely accessible, and the source is available for download under the New BSD License. Since GeneDesign was published and made publicly available 3 years ago, we have made its code base more efficient, added several algorithms and modules, updated the restriction enzyme library, added batch processing capabilities, and added several command line modules, all of which we briefly describe here.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.