Evidence map›Paper›PMID 20211137›Full record

ArticleCell2010

Distinct factors control histone variant H3.3 localization at specific genomic regions.

Aaron D Goldberg, Laura A Banaszynski, Kyung-Min Noh, Peter W Lewis, Simon J Elsaesser, Sonja Stadler, Scott Dewell, Martin Law, Xingyi Guo, Xuan Li and 19 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 813 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
813citing papers in PubMed, 1 pooled it
43.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

813 citing papers in PubMed, 1 synthesis or guideline pooled it, 1,269 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Epigenetic regulation of transgenes.Journal of biotechnology · 2026
    Review
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753 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 9 institutions in 2 countries.

Aaron D GoldbergLaboratory of Chromatin Biology and Epigenetics, The Rockefeller University, 1230 York Avenue, New York, NY 10065, USA.
Laura A Banaszynski
Kyung-Min Noh
Peter W Lewis
Simon J Elsaesser
Sonja Stadler
Scott Dewell
Martin Law
Xingyi Guo
Xuan Li
Duancheng Wen
Ariane Chapgier
Russell C DeKelver
Jeffrey C Miller
Ya-Li Lee
Elizabeth A Boydston
Michael C Holmes
Philip D Gregory
John M Greally
Shahin Rafii
Chingwen Yang
Peter J Scambler
David Garrick
Richard J Gibbons
Douglas R Higgs
Ileana M Cristea
Fyodor D Urnov
Deyou Zheng
C David Allis
Rockefeller University · USJohn Radcliffe Hospital · GBSangamo BioSciences (United States) · USAlbert Einstein College of Medicine · USPoint Richmond Tech Center · USCornell University · USHoward Hughes Medical Institute · USPrinceton University · USTarget (United States) · US

Funding

Weill Cornell/Rockefeller/Sloan-Kettering MST ProgramT32GM007739 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI HSU, KATHARINE C · 1985 to 2023
$51.1M
NEW TOOLS FOR EXPLORING THE DYNAMIC INTERACTOME(RMI)U54RR022220 · NCRR · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2005 to 2011
$19.3M
YNG1 PHD BINDING TO H3 3METHYL AT K4 PROMOTES TRANSCRIPTION AT TARGETED ORFSP41RR000862 · NCRR · ROCKEFELLER UNIVERSITY · PI DARNELL, JAMES E · 1985 to 2011
$16.1M
ENZYMOLOGY &BIOLOGICAL FUNC OF HISTONE ACETYLATIONR37GM053512 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI ALLIS, CHARLES DAVID · 1999 to 2008
$4.2M
Proteomic Tools to Uncover the Role of Chromatin Remodeling in HIV-1 InfectionDP1DA026192 · NIDA · PRINCETON UNIVERSITY · PI CRISTEA, ILEANA M. · 2008 to 2012
$3.9M
NUCLEAR DETERMINATION AND DIFFERENTIATION IN DEVELOPMENTR01GM053512 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI ALLIS, CHARLES DAVID · 1995 to 1998
–
Biotechnology and Biological Sciences Research Council BB/E009603/1British Heart FoundationHoward Hughes Medical InstituteMedical Research Council MC_U137961147NCRR NIH HHS P41 RR000862NCRR NIH HHS RR00862NCRR NIH HHS RR022220NCRR NIH HHS U54 RR022220NIDA NIH HHS DP1 DA026192NIDA NIH HHS DP1DA026192NIGMS NIH HHS GM07739NIGMS NIH HHS GM53122NIGMS NIH HHS GM53512NIGMS NIH HHS R37 GM053512NIGMS NIH HHS T32 GM007739
6 · The paper itself

Abstract

The incorporation of histone H3 variants has been implicated in the epigenetic memory of cellular state. Using genome editing with zinc-finger nucleases to tag endogenous H3.3, we report genome-wide profiles of H3 variants in mammalian embryonic stem cells and neuronal precursor cells. Genome-wide patterns of H3.3 are dependent on amino acid sequence and change with cellular differentiation at developmentally regulated loci. The H3.3 chaperone Hira is required for H3.3 enrichment at active and repressed genes. Strikingly, Hira is not essential for localization of H3.3 at telomeres and many transcription factor binding sites. Immunoaffinity purification and mass spectrometry reveal that the proteins Atrx and Daxx associate with H3.3 in a Hira-independent manner. Atrx is required for Hira-independent localization of H3.3 at telomeres and for the repression of telomeric RNA. Our data demonstrate that multiple and distinct factors are responsible for H3.3 localization at specific genomic locations in mammalian cells.

Indexed as

AnimalsBinding SitesCell Cycle ProteinsEmbryonic Stem CellsGenomeHistone ChaperonesHistonesMiceMice, Inbred C57BLTelomereTranscription FactorsTranscription Initiation SiteCell Cycle ProteinsHira protein, mouseHistone ChaperonesHistonesTranscription Factors

Identifiers

PMID20211137
PMCPMC2885838
OpenAlexW1970916644

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.