Evidence map›Paper›PMID 20208565›Full record

ArticleOncogene2010

Loss of type III transforming growth factor-beta receptor expression is due to methylation silencing of the transcription factor GATA3 in renal cell carcinoma.

S J Cooper, H Zou, S N Legrand, L A Marlow, C A von Roemeling, D C Radisky, K J Wu, N Hempel, V Margulis, H W Tun and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Oncogene, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 1 pooled it
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 1 synthesis or guideline pooled it, 43 citations in OpenAlex.

  1. Pooled it
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  15. Review
  16. Role of DNA methylation in renal cell carcinoma.Journal of hematology & oncology · 2015
    Review
  17. Distinct role of Tim-3 in systemic lupus erythematosus and clear cell renal cell carcinoma.International journal of clinical and experimental medicine · 2015
    Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 1 country.

S J CooperDepartment of Cancer Biology, Mayo Clinic Comprehensive Cancer Center, Mayo Clinic, Jacksonville, FL 32224, USA.
H Zou
S N Legrand
L A Marlow
C A von Roemeling
D C Radisky
K J Wu
N Hempel
V Margulis
H W Tun
G C Blobe
C G Wood
J A Copland
Mayo Clinic in Florida · USDuke Medical Center · USJacksonville College · USThe University of Texas MD Anderson Cancer Center · USWinnMed · USMayo Clinic in Arizona · US

Funding

TbetaRIII as a Mediator/Regulator of SignalingR01CA106307 · NCI · DUKE UNIVERSITY · PI BLOBE, GERARD C · 2005 to 2009
$1.6M
TGF Beta receptor biology in human renal cell carcinomaR01CA104505 · NCI · MAYO CLINIC JACKSONVILLE · PI COPLAND, JOHN A. · 2004 to 2009
$1.4M
NCI NIH HHS 3R01CA104505-05S1NCI NIH HHS CA104505NCI NIH HHS CA106307NCI NIH HHS R01 CA104505NCI NIH HHS R01 CA106307
6 · The paper itself

Abstract

Loss of transforming growth factor-beta receptor III (TbetaRIII) correlates with loss of transforming growth factor-beta (TGF-beta) responsiveness and suggests a role for dysregulated TGF-beta signaling in clear cell renal cell carcinoma (ccRCC) progression and metastasis. Here we identify that for all stages of ccRCC TbetaRIII expression is downregulated in patient-matched tissue samples and cell lines. We find that this loss of expression is not due to methylation of the gene and we define GATA3 as the first transcriptional factor to positively regulate TbetaRIII expression in human cells. We localize GATA3's binding to a 10-bp region of the TbetaRIII proximal promoter. We demonstrate that GATA3 mRNA is downregulated in all stages, of ccRCC, mechanistically show that GATA3 is methylated in ccRCC patient tumor tissues as well as cell lines, and that inhibiting GATA3 expression in normal renal epithelial cells downregulates TbetaRIII mRNA and protein expression. These data support a sequential model whereby loss of GATA3 expression through epigenetic silencing decreases TbetaRIII expression during ccRCC progression.

Indexed as

Gene Expression Regulation, NeoplasticGene SilencingBiomarkers, TumorBlotting, WesternCarcinoma, Renal CellCell Line, TumorDNA MethylationElectrophoretic Mobility Shift AssayGATA3 Transcription FactorGene Expression ProfilingHumansImmunoenzyme TechniquesKidney NeoplasmsLuciferasesOligonucleotide Array Sequence AnalysisPromoter Regions, GeneticbetaglycanBiomarkers, TumorGATA3 protein, humanGATA3 Transcription FactorLuciferasesProteoglycansReceptors, Transforming Growth Factor betaRNA, MessengerTransforming Growth Factor beta

Identifiers

PMID20208565
PMCPMC3472631
OpenAlexW2027297938

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.