Evidence map›Paper›PMID 20207970›Full record

ArticleInvestigative ophthalmology & visual science2010

Identification of novel substrates for the serine protease HTRA1 in the human RPE secretome.

Eunkyung An, Supti Sen, Sung Kyu Park, Heather Gordish-Dressman, Yetrib Hathout

Open access · hybridAbstract read
In one paragraph

Article in Investigative ophthalmology & visual science, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed, 1 pooled it
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 1 synthesis or guideline pooled it, 110 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Modeling complex age-related eye disease.Progress in retinal and eye research · 2024
    Review
  8. Article
  9. SEPDB: a database of secreted proteins.Database : the journal of biological databases and curation · 2024
    Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. CRISPR editing demonstrates rs10490924 raised oxidative stress in iPSC-derived retinal cells from patients withProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  15. Current Views on Chr10q26 Contribution to Age-Related Macular Degeneration.Advances in experimental medicine and biology · 2023
    Review
  16. Review
  17. Review
  18. Article
  19. Article
  20. Review

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Eunkyung AnCenter for Genetic Medicine, Children's National Medical Center, Washington, DC, USA.
Supti Sen
Sung Kyu Park
Heather Gordish-Dressman
Yetrib Hathout
Children's National · US

Funding

NEUROIMAGING COREP30HD040677 · NICHD · CHILDREN'S RESEARCH INSTITUTE · PI VITTORIO GALLO, VITTORIO GALLO VITTORIO GALLO · 2001 to 2015
$15.9M
NCMRR-DC Core Molecular & Functional Outcome Measures in Rehabilitation MedicineR24HD050846 · NICHD · CHILDREN'S RESEARCH INSTITUTE · PI KNOBLACH, SUSAN M · 2005 to 2014
$8.6M
Comparative Proteomics to Study Age-Related MaculopathyR21EY016723 · NEI · CHILDREN'S RESEARCH INSTITUTE · PI HATHOUT, YETRIB · 2007 to 2009
$517k
NEI NIH HHS R21 EY016723NEI NIH HHS R21EY016723NEI NIH HHS R21EY016723-02S109NICHD NIH HHS 5P30HD040677NICHD NIH HHS 5R24HD050846NICHD NIH HHS P30 HD040677NICHD NIH HHS R24 HD050846
6 · The paper itself

Abstract

PURPOSE. To define the role of the serine protease HTRA1 in age-related macular degeneration (AMD) by examining its expression level and identifying its potential substrates in the context of primary RPE cell extracellular milieu. METHODS. Primary RPE cell cultures were established from human donor eyes and screened for CFH, ARMS2, and HTRA1 risk genotypes by using an allele-discrimination assay. HTRA1 expression in genotyped RPE cells was determined by using real-time PCR and quantitative proteomics. Potential HTRA1 substrates were identified by incubating RPE-conditioned medium with or without human recombinant HTRA1. Selectively cleaved proteins were quantified by using the differential stable isotope labeling by amino acids in cell culture (SILAC) strategy. RESULTS. HTRA1 mRNA levels were threefold higher in primary RPE cells homozygous for the HTRA1 promoter risk allele than in RPE cells with the wild-type allele, which translated into a twofold increase in HTRA1 secretion by RPE cells with the risk genotype. A total of 196 extracellular proteins were identified in the RPE secretome, and only 8 were found to be selectively cleaved by the human recombinant HTRA1. These include fibromodulin with 90% cleavage, clusterin (50%), ADAM9 (54%), vitronectin (54%), and alpha2-macroglobulin (55%), as well as some cell surface proteins including talin-1 (21%), fascin (40%), and chloride intracellular channel protein 1 (51%). CONCLUSIONS. Recombinant HTRA1 cleaves RPE-secreted proteins involved in regulation of the complement pathway (clusterin, vitronectin, and fibromodulin) and of amyloid deposition (clusterin, alpha2-macroglobulin, and ADAM9). These findings suggest a link between HTRA1, complement regulation, and amyloid deposition in AMD pathogenesis.

Indexed as

ADAM ProteinsAgedalpha-MacroglobulinsAmyloidBlotting, WesternCells, CulturedChromatography, High Pressure LiquidClusterinComplement Factor HComplement Pathway, ClassicalElectrophoresis, Polyacrylamide GelExtracellular Matrix ProteinsFibromodulinGenotypeHigh-Temperature Requirement A Serine Peptidase 1HumansADAM9 protein, humanADAM Proteinsalpha-MacroglobulinsAmyloidARMS2 protein, humanCLU protein, humanClusterinComplement Factor HExtracellular Matrix ProteinsFibromodulinFMOD protein, humanHigh-Temperature Requirement A Serine Peptidase 1HTRA1 protein, humanMembrane ProteinsProteinsProteoglycansRecombinant ProteinsRNA, MessengerSerine EndopeptidasesVitronectin

Identifiers

PMID20207970
PMCPMC2904004
OpenAlexW2023529356

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.