Evidence map›Paper›PMID 20206336›Full record

ArticleAmerican journal of human genetics2010

Identification of a recurrent microdeletion at 17q23.1q23.2 flanked by segmental duplications associated with heart defects and limb abnormalities.

Blake C Ballif, Aaron Theisen, Jill A Rosenfeld, Ryan N Traylor, Julie Gastier-Foster, Devon Lamb Thrush, Caroline Astbury, Dennis Bartholomew, Kim L McBride, Robert E Pyatt and 14 more

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In one paragraph

Article in American journal of human genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
8.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 167 citations in OpenAlex.

  1. Article
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  4. The Glu86 Residue in TBX4 Proves Critical for Human Lung Development.American journal of medical genetics. Part A · 2025
    Article
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  8. Molecular Function and Contribution ofAmerican journal of respiratory and critical care medicine · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 8 institutions in 1 country.

Blake C BallifSignature Genomic Laboratories, Spokane, WA 99207, USA. ballif@signaturegenomics.com
Aaron Theisen
Jill A Rosenfeld
Ryan N Traylor
Julie Gastier-Foster
Devon Lamb Thrush
Caroline Astbury
Dennis Bartholomew
Kim L McBride
Robert E Pyatt
Kate Shane
Wendy E Smith
Valerie Banks
William B Gallentine
Pamela Brock
M Katharine Rudd
Margaret P Adam
Julia A Keene
John A Phillips
Jean P Pfotenhauer
Gordon C Gowans
Pawel Stankiewicz
Bassem A Bejjani
Lisa G Shaffer
Nationwide Children's Hospital · USSignature Research (United States) · USEmory University · USChildren's Specialty Group · USUniversity of Louisville · USVanderbilt University Medical Center · USBaylor College of Medicine · USDuke Medical Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Segmental duplications, which comprise approximately 5%-10% of the human genome, are known to mediate medically relevant deletions, duplications, and inversions through nonallelic homologous recombination (NAHR) and have been suggested to be hot spots in chromosome evolution and human genomic instability. We report seven individuals with microdeletions at 17q23.1q23.2, identified by microarray-based comparative genomic hybridization (aCGH). Six of the seven deletions are approximately 2.2 Mb in size and flanked by large segmental duplications of >98% sequence identity and in the same orientation. One of the deletions is approximately 2.8 Mb in size and is flanked on the distal side by a segmental duplication, whereas the proximal breakpoint falls between segmental duplications. These characteristics suggest that NAHR mediated six out of seven of these rearrangements. These individuals have common features, including mild to moderate developmental delay (particularly speech delay), microcephaly, postnatal growth retardation, heart defects, and hand, foot, and limb abnormalities. Although all individuals had at least mild dysmorphic facial features, there was no characteristic constellation of features that would elicit clinical suspicion of a specific disorder. The identification of common clinical features suggests that microdeletions at 17q23.1q23.2 constitute a novel syndrome. Furthermore, the inclusion in the minimal deletion region of TBX2 and TBX4, transcription factors belonging to a family of genes implicated in a variety of developmental pathways including those of heart and limb, suggests that these genes may play an important role in the phenotype of this emerging syndrome.

Indexed as

Chromosome DeletionSegmental Duplications, GenomicAdolescentChild, PreschoolChromosomes, Human, Pair 17Comparative Genomic HybridizationCraniofacial AbnormalitiesDevelopmental DisabilitiesFemaleHeart Defects, CongenitalHumansInfantIn Situ Hybridization, FluorescenceLimb Deformities, CongenitalMaleOligonucleotide Array Sequence AnalysisT-Box Domain Protein 2T-Box Domain ProteinsTBX4 protein, human

Identifiers

PMID20206336
PMCPMC2833380
OpenAlexW2036392989

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.