Evidence map›Paper›PMID 20203084›Full record

ArticleNucleic acids research2010

The crystal structure of unmodified tRNAPhe from Escherichia coli.

Robert T Byrne, Andrey L Konevega, Marina V Rodnina, Alfred A Antson

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 96 citations in OpenAlex.

  1. Article
  2. Article
  3. Imino chemical shift assignments of tRNABiomolecular NMR assignments · 2024
    Article
  4. Review
  5. RNA modifying enzymes shape tRNA biogenesis and function.The Journal of biological chemistry · 2024
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Probing the conformational changes ofFrontiers in molecular biosciences · 2023
    Article
  12. Article
  13. Article
  14. Repurposing tRNAs for nonsense suppression.Nature communications · 2021
    Article
  15. Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Adaptation of theInternational journal of molecular sciences · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 3 countries.

Robert T ByrneYork Structural Biology Laboratory, Department of Chemistry, University of York, Heslington, North Yorkshire, YO10 5YW, UK.
Andrey L Konevega
Marina V Rodnina
Alfred A Antson
Russian Academy of Sciences · RUMax Planck Society · DE

Funding

Biotechnology and Biological Sciences Research CouncilWellcome Trust 077371Wellcome Trust 081916
6 · The paper itself

Abstract

Post-transcriptional nucleoside modifications fine-tune the biophysical and biochemical properties of transfer RNA (tRNA) so that it is optimized for participation in cellular processes. Here we report the crystal structure of unmodified tRNA(Phe) from Escherichia coli at a resolution of 3 A. We show that in the absence of modifications the overall fold of the tRNA is essentially the same as that of mature tRNA. However, there are a number of significant structural differences, such as rearrangements in a triplet base pair and a widened angle between the acceptor and anticodon stems. Contrary to previous observations, the anticodon adopts the same conformation as seen in mature tRNA.

Indexed as

AnticodonCrystallography, X-RayEscherichia coliMetalsModels, MolecularNucleic Acid ConformationRNA, Transfer, PheAnticodonMetalsRNA, Transfer, Phe

Identifiers

PMID20203084
PMCPMC2896525
OpenAlexW2026004038

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.