Evidence map›Paper›PMID 20201893›Full record

ArticleAnnals of the New York Academy of Sciences2010

Multiscale modeling of metabolism, flows, and exchanges in heterogeneous organs.

James B Bassingthwaighte, Gary M Raymond, Erik Butterworth, Adam Alessio, James H Caldwell

Open access · greenAbstract read
In one paragraph

Article in Annals of the New York Academy of Sciences, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 13 citations in OpenAlex.

  1. Pharmacokinetics ofJournal of applied physiology (Bethesda, Md. : 1985) · 2019
    Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

James B BassingthwaighteDepartment of Bioengineering, University of Washington, Seattle, Washington 98195-5601, USA. jbb2@u.washington.edu
Gary M Raymond
Erik Butterworth
Adam Alessio
James H Caldwell
University of Washington · US

Funding

3D IMAGING &COMPUTER MODEL OF THE RESPIRATORY TRACTR01HL073598 · NHLBI · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI CORLEY, RICHARD A · 2004 to 2014
$17.6M
WHOLE BODY DISTRIBUTION &PHARMOKINETIC MODELSP41RR001243 · NCRR · UNIVERSITY OF WASHINGTON · PI KROLL, KEITH · 1985 to 2002
$2.3M
Simulation Resource in Circulatory Mass TransportR01EB001973 · NIBIB · UNIVERSITY OF WASHINGTON · PI BASSINGTHWAIGHTE, JAMES B · 2003 to 2006
$1.8M
Modeling for Heart, Lung, and Blood: From Cell to OrganT15HL088516 · NHLBI · UNIVERSITY OF WASHINGTON · PI BASSINGTHWAIGHTE, JAMES B · 2007 to 2010
$929k
Quantitative Cardiac PET/CT ImagingK25HL086713 · NHLBI · UNIVERSITY OF WASHINGTON · PI ALESSIO, ADAM M · 2007 to 2011
$567k
DISPERSION OF DIFFUSIBLE INDICATORS IN THE BODYR01HL019139 · NHLBI · UNIVERSITY OF WASHINGTON · PI BASSINGTHWAIGHTE, JAMES B · 1985 to 2001
$372k
DISPERSION OF DIFFUSIBLE INDICATORS IN THE BODYR37HL019139 · NHLBI · UNIVERSITY OF WASHINGTON · PI BASSINGTHWAIGHTE, JAMES B · 1986 to 1995
–
FDA HHS BE1973NCRR NIH HHS P41 RR001243NCRR NIH HHS RR1243NHLBI NIH HHS HL19139NHLBI NIH HHS HL73598NHLBI NIH HHS HL88516NHLBI NIH HHS K25 HL086713NHLBI NIH HHS R01 HL019139NHLBI NIH HHS R01 HL073598NHLBI NIH HHS T15 HL088516NIBIB NIH HHS R01 EB001973
6 · The paper itself

Abstract

Large-scale models accounting for the processes supporting metabolism and function in an organ or tissue with a marked heterogeneity of flows and metabolic rates are computationally complex and tedious to compute. Their use in the analysis of data from positron emission tomography (PET) and magnetic resonance imaging (MRI) requires model reduction since the data are composed of concentration-time curves from hundreds of regions of interest (ROI) within the organ. Within each ROI, one must account for blood flow, intracapillary gradients in concentrations, transmembrane transport, and intracellular reactions. Using modular design, we configured a whole organ model, GENTEX, to allow adaptive usage for multiple reacting molecular species while omitting computation of unused components. The temporal and spatial resolution and the number of species are adaptable and the numerical accuracy and computational speed is adjustable during optimization runs, which increases accuracy and spatial resolution as convergence approaches. An application to the interpretation of PET image sequences after intravenous injection of 13NH3 provides functional image maps of regional myocardial blood flows.

Indexed as

Models, BiologicalAnimalsCoronary VesselsDatabases, FactualGenetic HeterogeneityMyocardium

Identifiers

PMID20201893
PMCPMC2849657
OpenAlexW1896879352

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.