Evidence map›Paper›PMID 20200224›Full record

ArticleMolecular biology of the cell2010

Requirements for transitional endoplasmic reticulum site structure and function in Saccharomyces cerevisiae.

Polina Shindiapina, Charles Barlowe

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Sorting and Export of Proteins at the Endoplasmic Reticulum.Cold Spring Harbor perspectives in biology · 2023
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. The Role of Secretory Pathways inJournal of fungi (Basel, Switzerland) · 2020
    Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Regulation of ER-Golgi Transport Dynamics by GTPases in Budding Yeast.Frontiers in cell and developmental biology · 2017
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Polina ShindiapinaDepartment of Biochemistry, Dartmouth Medical School, Hanover, NH 03755, USA.
Charles Barlowe
Dartmouth College · US

Funding

Mechanisms of COPII-Dependent TransportR37GM052549 · NIGMS · DARTMOUTH COLLEGE · PI BARLOWE, CHARLES K · 2007 to 2016
$5.3M
NIGMS NIH HHS R37 GM052549
6 · The paper itself

Abstract

Secretory proteins are exported from the endoplasmic reticulum (ER) at specialized regions known as the transitional ER (tER). Coat protein complex II (COPII) proteins are enriched at tER sites, although the mechanisms underlying tER site assembly and maintenance are not understood. Here, we investigated the dynamic properties of tER sites in Saccharomyces cerevisiae and probed protein and lipid requirements for tER site structure and function. Thermosensitive sec12 and sec16 mutations caused a collapse of tER sites in a manner that depended on nascent secretory cargo. Continual fatty acid synthesis was required for ER export and for normal tER site structure, whereas inhibition of sterol and ceramide synthesis produced minor effects. An in vitro assay to monitor assembly of Sec23p-green fluorescent protein at tER sites was established to directly test requirements. tER sites remained active for approximately 10 min in vitro and depended on Sec12p function. Bulk phospholipids were also required for tER site structure and function in vitro, whereas depletion of phophatidylinositol selectively inhibited coat protein complex II (COPII) budding but not assembly of tER site structures. These results indicate that tER sites persist through relatively stringent treatments in which COPII budding was strongly inhibited. We propose that tER site structures are stable elements that are assembled on an underlying protein and lipid scaffold.

Indexed as

CeruleninCOP-Coated VesiclesCycloheximideEndoplasmic ReticulumFatty AcidsFatty Acid Synthesis InhibitorsGreen Fluorescent ProteinsGTPase-Activating ProteinsGuanine Nucleotide Exchange FactorsImmunoblottingMembrane GlycoproteinsMembrane ProteinsMicroscopy, ConfocalMicroscopy, FluorescenceMutationNuclear Pore Complex ProteinsCeruleninCycloheximideFatty AcidsFatty Acid Synthesis InhibitorsGreen Fluorescent ProteinsGTPase-Activating ProteinsGuanine Nucleotide Exchange FactorsMembrane GlycoproteinsMembrane ProteinsNuclear Pore Complex ProteinsPhospholipasesProtein Synthesis InhibitorsRecombinant Fusion ProteinsSaccharomyces cerevisiae ProteinsSEC12 protein, S cerevisiaeSEC13 protein, S cerevisiaeSEC16 protein, S cerevisiaeSEC23 protein, S cerevisiae

Identifiers

PMID20200224
PMCPMC2861612
OpenAlexW2138805595

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.