ArticlePlant, cell & environment2010
Use of the growing environment as a source of variation to identify the quantitative trait transcripts and modules of co-expressed genes that determine chlorogenic acid accumulation.
Article in Plant, cell & environment, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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Who cites it
18 citing papers in PubMed, 69 citations in OpenAlex.
- Geographic provenance and environmental growing conditions as factors influencing phytochemical composition of Arabica green coffee beans.Plant biology (Stuttgart, Germany) · 2026Article
- Phytochemical Profiling, Antioxidant Capacity, and α-Amylase/α-Glucosidase Inhibitory Effects of 29 Faba Bean (Biology · 2025Article
- Major Bioactive Compounds in Seeds, Husks, and Leaves of Selected Genotypes ofPlants (Basel, Switzerland) · 2025Article
- Volatile Metabolite Profiles of Robusta Green Bean Coffee From Different Geographical Origins in West Java and Their Correlation With Temperature, Rainfall, and Altitudes Using SPME GC-MS-Based Metabolomics.International journal of food science · 2024Article
- Green Alternatives as Antimicrobial Agents in Mitigating Periodontal Diseases: A Narrative Review.Microorganisms · 2023Review
- Advances in Production of Hydroxycinnamoyl-Quinic Acids: From Natural Sources to Biotechnology.Antioxidants (Basel, Switzerland) · 2022Review
- Valorization of Traditional Italian Walnut (Plants (Basel, Switzerland) · 2022Article
- Machine learning and statistics to qualify environments through multi-traits in Coffea arabica.PloS one · 2021Article
- Article
- Slower development of lower canopy beans produces better coffee.Journal of experimental botany · 2020Article
- Potential biomonitoring of atmospheric carbon dioxide in Coffea arabica leaves using near-infrared spectroscopy and partial least squares discriminant analysis.Environmental science and pollution research international · 2019Article
- Potential Oral Health Care Agent from Coffee Against Virulence Factor of Periodontitis.Nutrients · 2019Article
- Integrative analysis of the late maturation programme and desiccation tolerance mechanisms in intermediate coffee seeds.Journal of experimental botany · 2018Article
- Exploiting the Genetic Diversity of Maize Using a Combined Metabolomic, Enzyme Activity Profiling, and Metabolic Modeling Approach to Link Leaf Physiology to Kernel Yield.The Plant cell · 2017Article
- Article
- Rapid accumulation and low degradation: key parameters of Tomato yellow leaf curl virus persistence in its insect vector Bemisia tabaci.Scientific reports · 2015Article
- Bioactive micronutrients in coffee: recent analytical approaches for characterization and quantification.ISRN nutrition · 2014Review
- Constitutively elevated salicylic acid levels alter photosynthesis and oxidative state but not growth in transgenic populus.The Plant cell · 2013Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
5 authors at 3 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Developing Coffea arabica seeds accumulate large amounts of chlorogenic acids (CGAs) as a storage form of phenylpropanoid derivatives, making coffee a valuable model to investigate the metabolism of these widespread plant phenolics. However, developmental and environmental regulations of CGA metabolism are poorly understood. In the present work, the expression of selected phenylpropanoid genes, together with CGA isomer profiles, was monitored throughout seed development across a wide set of contrasted natural environments. Although CGA metabolism was controlled by major developmental factors, the mean temperature during seed development had a direct impact on the time-window of CGA biosynthesis, as well as on final CGA isomer composition through subtle transcriptional regulations. We provide evidence that the variability induced by the environment is a useful tool to test whether CGA accumulation is quantitatively modulated at the transcriptional level, hence enabling detection of rate-limiting transcriptional steps [quantitative trait transcripts (QTTs)] for CGA biosynthesis. Variations induced by the environment also enabled a better description of the phenylpropanoid gene transcriptional network throughout seed development, as well as the detection of three temporally distinct modules of quantitatively co-expressed genes. Finally, analysis of metabolite-to-metabolite relationships revealed new biochemical characteristics of the isomerization steps that remain uncharacterized at the gene level.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.