ArticleBioinformation2009
High GC content: critical parameter for predicting stress regulated miRNAs in Arabidopsis thaliana.
Article in Bioinformation, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed.
- Predicting candidate miRNAs for targeting begomovirus to induce sequence-specific gene silencing in chilli plants.Frontiers in plant science · 2024Article
- Genome-wide analysis of AAAG and ACGT cis-elements in Arabidopsis thaliana reveals their involvement with genes downregulated under jasmonic acid response in an orientation independent manner.G3 (Bethesda, Md.) · 2022Article
- Quantification of 8-International journal of molecular sciences · 2022Article
- A deeper view into the significance of simple sequence repeats in pre-miRNAs provides clues for its possible roles in determining the function of microRNAs.BMC genetics · 2018Article
- miRNA and Degradome Sequencing Reveal miRNA and Their Target Genes That May Mediate Shoot Growth in Spur Type Mutant "Yanfu 6".Frontiers in plant science · 2017Article
- Identification and differential regulation of microRNAs in response to methyl jasmonate treatment in Lycoris aurea by deep sequencing.BMC genomics · 2016Article
- Article
- The QQS orphan gene of Arabidopsis modulates carbon and nitrogen allocation in soybean.Plant biotechnology journal · 2015Article
- Genome-wide discovery and differential regulation of conserved and novel microRNAs in chickpea via deep sequencing.Journal of experimental botany · 2014Article
- Patterns and evolution of ACGT repeat cis-element landscape across four plant genomes.BMC genomics · 2013Article
- STIFDB2: an updated version of plant stress-responsive transcription factor database with additional stress signals, stress-responsive transcription factor binding sites and stress-responsive genes in Arabidopsis and rice.Plant & cell physiology · 2013Article
- Does base-pairing strength play a role in microRNA repression?RNA (New York, N.Y.) · 2012Article
- Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants.Biochimica et biophysica acta · 2012Review
- High AU content: a signature of upregulated miRNA in cardiac diseases.Bioinformation · 2010Article
Corrections and comments
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Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Plants like Arabidopsis thaliana are convenient model systems to study fundamental questions related to regulation of the stress transcriptome in response to stress challenges. Microarray results of the Arabidopsis transcriptome indicate that several genes could be upregulated during multiple stresses. High-salinity, drought, and low temperature are three common environmental stress factors that seriously influence plant growth and development worldwide. Recently, microRNAs (miRNAs) have emerged as a class of gene expression regulators that have also been linked to stress responses. However, the relationship between miRNA expression and stress responses is just beginning to be explored. Here we have computationally analyzed 123 non redundant miRNA sequences reported for Arabidopsis thaliana, including 17 miRNA sequences which were reported to be stress regulated in literature. A significant increase in the GC content of stress regulated miRNA sequences was observed which further extends the view that miRNAs act as ubiquitous regulators under stress conditions. GC content may also be considered as a critical parameter for predicting stress regulated miRNAs in plants like Arabidopsis thaliana.
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