Evidence map›Paper›PMID 20197031›Full record

ArticleBiophysical journal2010

An iris-like mechanism of pore dilation in the CorA magnesium transport system.

Nilmadhab Chakrabarti, Chris Neale, Jian Payandeh, Emil F Pai, Régis Pomès

Abstract read
In one paragraph

Article in Biophysical journal, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed.

  1. Trial
  2. Article
  3. Article
  4. MRS2 missense variation at Asp216 abrogates inhibitory MgProtein science : a publication of the Protein Society · 2024
    Article
  5. Article
  6. Molecular basis of MgNature communications · 2023
    Article
  7. Hyphal Growth inMicrobiology spectrum · 2023
    Article
  8. Article
  9. Slow conformational dynamics of the human AStructure (London, England : 1993) · 2022
    Article
  10. MgeLife · 2022
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Loss of cytosolic MgBiochimica et biophysica acta. General subjects · 2019
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Nilmadhab ChakrabartiThe Hospital for Sick Children, Toronto, Canada.
Chris Neale
Jian Payandeh
Emil F Pai
Régis Pomès

Funding

Canadian Institutes of Health Research MOP-43949Canadian Institutes of Health Research MOP-86548
6 · The paper itself

Abstract

Magnesium translocation across cell membranes is essential for numerous physiological processes. Three recently reported crystal structures of the CorA magnesium transport system revealed a surprising architecture, with a bundle of giant alpha-helices forming a 60-A-long pore that extends beyond the membrane before widening into a funnel-shaped cytosolic domain. The presence of divalent cations in putative intracellular regulation sites suggests that these structures correspond to the closed conformation of CorA. To examine the nature of the conduction pathway, we performed 110-ns molecular-dynamics simulations of two of these structures in a lipid bilayer with and without regulatory ions. The results show that a 15-A-long hydrophobic constriction straddling the membrane-cytosol interface constitutes a steric bottleneck whose location coincides with an electrostatic barrier opposing cation translocation. In one of the simulations, structural relaxation after the removal of regulatory ions led to concerted changes in the tilt of the pore helices, resulting in iris-like dilation and spontaneous hydration of the hydrophobic neck. This simple and robust mechanism is consistent with the regulation of pore opening by intracellular magnesium concentration, and explains the unusual architecture of CorA.

Indexed as

Ion Channel GatingBacterial ProteinsCations, DivalentIon TransportMagnesiumPermeabilityPorosityProtein Structure, SecondaryStatic ElectricityThermodynamicsThermotoga maritimaTime FactorsWaterBacterial ProteinsCations, DivalentMagnesiumWater

Identifiers

PMID20197031
PMCPMC2830438

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.