Evidence map›Paper›PMID 20195610›Full record

ArticlePlant cell reports2010

The tissue expression pattern of the AtGRP5 regulatory region is controlled by a combination of positive and negative elements.

Amanda Mangeon, Claudia Magioli, Erika Tarré, Vanessa Cardeal, Cristina Araujo, Erica Falkenbach, Carla Andréa Benício Rocha, Camila Rangel-Lima, Gilberto Sachetto-Martins

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In one paragraph

Article in Plant cell reports, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Frontiers in plant science · 2022
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Computing gene expression data with a knowledge-based gene clustering approach.International journal of biochemistry and molecular biology · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Amanda MangeonLaboratório de Genômica Funcional e Transdução de Sinal, Departamento de Genética, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.
Claudia Magioli
Erika Tarré
Vanessa Cardeal
Cristina Araujo
Erica Falkenbach
Carla Andréa Benício Rocha
Camila Rangel-Lima
Gilberto Sachetto-Martins

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The AtGRP5 gene from Arabidopsis thaliana encodes a glycine-rich protein which has a major activity in protoderm-derived cells and is expressed in cells that undergo the first anatomical modifications leading to somatic embryo development. It has been previously demonstrated that its minimum promoter is 316 bp long including the 5'UTR and presents three putative TATA-boxes sequences and several regions that are homologous to previous characterized cis-acting elements. In order to better characterize the AtGRP5 expression and to identify the promoter regions involved in its preferential epidermal expression, in situ hybridization and 5' promoter deletions were employed. In situ hybridization and GUS expression assays indicate that, besides being present during somatic embryogenesis, AtGRP5 is also expressed during the zygotic embryo development. The sequential 5' deletions indicate that multiple negative and positive regulatory elements are present in the AtGRP5 promoter and operate in order to confer its distinct expression pattern. A 44-bp region was shown to be essential for the epidermal expression of this gene in leaves, stems, flowers and fruits, and is also responsible for high activity of the AtGRP5 promoter in zygotic embryos. An element responsible for the phloem expression was also identified in a 35-bp region.

Indexed as

Gene Expression Regulation, PlantPromoter Regions, GeneticArabidopsisArabidopsis ProteinsGene DeletionGene Expression Regulation, DevelopmentalNicotianaPlants, Genetically ModifiedTATA BoxArabidopsis Proteins

Identifiers

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.