Evidence map›Paper›PMID 20195511›Full record

ArticlePLoS genetics2010

Ku regulates the non-homologous end joining pathway choice of DNA double-strand break repair in human somatic cells.

Farjana Fattah, Eu Han Lee, Natalie Weisensel, Yongbao Wang, Natalie Lichter, Eric A Hendrickson

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 132 papers.

0numbers the graph read from it
0cells of the map it votes in
132citing papers in PubMed
11.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

132 citing papers in PubMed, 237 citations in OpenAlex.

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72 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Farjana FattahDepartment of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota Medical School, Minneapolis, Minnesota, United States of America.
Eu Han Lee
Natalie Weisensel
Yongbao Wang
Natalie Lichter
Eric A Hendrickson
University of Minnesota Medical Center · USUniversity of Minnesota · US

Funding

Women's CancerP30CA077598 · NCI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI Douglas Yee · 1998 to 2026
$100.4M
Training Grant: Functional Proteomics of AgingT32AG029796 · NIA · UNIVERSITY OF MINNESOTA · PI EDGAR A ARRIAGA, Douglas G Mashek · 2008 to 2026
$6.6M
A human somatic cell model for Dyskeratosis CongenitaR01HL079559 · NHLBI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI HENDRICKSON, ERIC A · 2004 to 2008
$1.7M
Ku86 Controls DNA Repair, Telomeres &Genomic StabilityR01GM069576 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI HENDRICKSON, ERIC A · 2005 to 2008
$976k
NCI NIH HHS P30 CA077598NCI NIH HHS P30 CA77598NHLBI NIH HHS HL079559NHLBI NIH HHS R01 HL079559NIA NIH HHS T32 AG029796NIGMS NIH HHS GM069576NIGMS NIH HHS R01 GM069576
6 · The paper itself

Abstract

The repair of DNA double-strand breaks (DSBs) is critical for the maintenance of genomic integrity and viability for all organisms. Mammals have evolved at least two genetically discrete ways to mediate DNA DSB repair: homologous recombination (HR) and non-homologous end joining (NHEJ). In mammalian cells, most DSBs are preferentially repaired by NHEJ. Recent work has demonstrated that NHEJ consists of at least two sub-pathways-the main Ku heterodimer-dependent or "classic" NHEJ (C-NHEJ) pathway and an "alternative" NHEJ (A-NHEJ) pathway, which usually generates microhomology-mediated signatures at repair junctions. In our study, recombinant adeno-associated virus knockout vectors were utilized to construct a series of isogenic human somatic cell lines deficient in the core C-NHEJ factors (Ku, DNA-PK(cs), XLF, and LIGIV), and the resulting cell lines were characterized for their ability to carry out DNA DSB repair. The absence of DNA-PK(cs), XLF, or LIGIV resulted in cell lines that were profoundly impaired in DNA DSB repair activity. Unexpectedly, Ku86-null cells showed wild-type levels of DNA DSB repair activity that was dominated by microhomology joining events indicative of A-NHEJ. Importantly, A-NHEJ DNA DSB repair activity could also be efficiently de-repressed in LIGIV-null and DNA-PK(cs)-null cells by subsequently reducing the level of Ku70. These studies demonstrate that in human cells C-NHEJ is the major DNA DSB repair pathway and they show that Ku is the critical C-NHEJ factor that regulates DNA NHEJ DSB pathway choice.

Indexed as

DNA Breaks, Double-StrandedDNA RepairRecombination, GeneticAnimalsCricetinaeDNADNA-Activated Protein KinaseDNA-Binding ProteinsDNA HelicasesDNA Ligase ATPDNA LigasesDNA Repair EnzymesHaploidyHCT116 CellsHumansKu AutoantigenDNADNA-Activated Protein KinaseDNA-Binding ProteinsDNA HelicasesDNA Ligase ATPDNA LigasesDNA Repair EnzymesKu AutoantigenNHEJ1 protein, humanNuclear ProteinsPRKDC protein, humanXRCC5 protein, human

Identifiers

PMID20195511
PMCPMC2829059
OpenAlexW1995920076

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.