ReviewNature methods2010
Visualizing genomes: techniques and challenges.
Review in Nature methods, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
75 citing papers in PubMed.
- Rapid Exploratory Data Visualization for Cancer Genomics.Methods in molecular biology (Clifton, N.J.) · 2026Article
- Methods for Chromosome-Scale Haplotype Reconstruction.Methods in molecular biology (Clifton, N.J.) · 2025Article
- Article
- Biocomputational Identification of sRNAs inIndian journal of microbiology · 2023Article
- OrchidBase 4.0: a database for orchid genomics and molecular biology.BMC plant biology · 2021Article
- Analysis, identification and visualization of subgroups in genomics.Briefings in bioinformatics · 2021Review
- Computational methods for chromosome-scale haplotype reconstruction.Genome biology · 2021Review
- Smash++: an alignment-free and memory-efficient tool to find genomic rearrangements.GigaScience · 2020Article
- Visualizing and comparing circular genomes using the CGView family of tools.Briefings in bioinformatics · 2019Review
- RNA-Sequencing Analysis of Paternal Low-Protein Diet-Induced Gene Expression Change in Mouse Offspring Adipocytes.G3 (Bethesda, Md.) · 2019Article
- WashU Epigenome Browser update 2019.Nucleic acids research · 2019Article
- Tasks, Techniques, and Tools for Genomic Data Visualization.Computer graphics forum : journal of the European Association for Computer Graphics · 2019Article
- Genetic Variations and Precision Medicine.Perspectives in health information managemen · 2019Review
- HiGlass: web-based visual exploration and analysis of genome interaction maps.Genome biology · 2018Article
- Genome-wide association study reveals a QTL and strong candidate genes for umbilical hernia in pigs on SSC14.BMC genomics · 2018Article
- Calreticulin and integrin alpha dissociation induces anti-inflammatory programming in animal models of inflammatory bowel disease.Nature communications · 2018Article
- Computational pan-genomics: status, promises and challenges.Briefings in bioinformatics · 2018Review
- TumorMap: Exploring the Molecular Similarities of Cancer Samples in an Interactive Portal.Cancer research · 2017Article
- SimpleSynteny: a web-based tool for visualization of microsynteny across multiple species.Nucleic acids research · 2016Article
- GeneValidator: identify problems with protein-coding gene predictions.Bioinformatics (Oxford, England) · 2016Article
15 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
5 authors.
Funding
Abstract
As our ability to generate sequencing data continues to increase, data analysis is replacing data generation as the rate-limiting step in genomics studies. Here we provide a guide to genomic data visualization tools that facilitate analysis tasks by enabling researchers to explore, interpret and manipulate their data, and in some cases perform on-the-fly computations. We will discuss graphical methods designed for the analysis of de novo sequencing assemblies and read alignments, genome browsing, and comparative genomics, highlighting the strengths and limitations of these approaches and the challenges ahead.
Indexed as
Identifiers
20195257What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.