Evidence map›Paper›PMID 20195256›Full record

ReviewNature methods2010

Visualization of macromolecular structures.

Seán I O'Donoghue, David S Goodsell, Achilleas S Frangakis, Fabrice Jossinet, Roman A Laskowski, Michael Nilges, Helen R Saibil, Andrea Schafferhans, Rebecca C Wade, Eric Westhof and 1 more

Abstract readReview
In one paragraph

Review in Nature methods, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed.

  1. The evolving landscape of molecular visualization.Protein science : a publication of the Protein Society · 2026
    Review
  2. Elements and roadmap for interactive molecular graphics and modeling "in the Holodeck".Protein science : a publication of the Protein Society · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Vectorial channeling as a mechanism for translational control by functional prions and condensates.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  11. UCSF ChimeraX: Structure visualization for researchers, educators, and developers.Protein science : a publication of the Protein Society · 2021
    Article
  12. Article
  13. Art and Science of the Cellular Mesoscale.Trends in biochemical sciences · 2020
    Review
  14. Illustrate: Software for Biomolecular Illustration.Structure (London, England : 1993) · 2019
    Article
  15. Article
  16. Review
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Seán I O'DonoghueEuropean Molecular Biology Laboratory, Heidelberg, Germany. sean.odonoghue@embl.de
David S Goodsell
Achilleas S Frangakis
Fabrice Jossinet
Roman A Laskowski
Michael Nilges
Helen R Saibil
Andrea Schafferhans
Rebecca C Wade
Eric Westhof
Arthur J Olson

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Structural biology is rapidly accumulating a wealth of detailed information about protein function, binding sites, RNA, large assemblies and molecular motions. These data are increasingly of interest to a broader community of life scientists, not just structural experts. Visualization is a primary means for accessing and using these data, yet visualization is also a stumbling block that prevents many life scientists from benefiting from three-dimensional structural data. In this review, we focus on key biological questions where visualizing three-dimensional structures can provide insight and describe available methods and tools.

Indexed as

Image Processing, Computer-AssistedMacromolecular SubstancesCrystallography, X-RayInternetModels, MolecularMolecular ConformationMacromolecular Substances

Identifiers

PMID20195256
PMCPMC7097155

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.