ArticleNature methods2010
Visualizing biological data-now and in the future.
Article in Nature methods, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers, 1 of them a synthesis that pooled it.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
61 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Meta-analysis based gene expression profiling reveals functional genes in ovarian cancer.Bioscience reports · 2020Pooled it
- Elements and roadmap for interactive molecular graphics and modeling "in the Holodeck".Protein science : a publication of the Protein Society · 2026Article
- Rapid Exploratory Data Visualization for Cancer Genomics.Methods in molecular biology (Clifton, N.J.) · 2026Article
- The MolecularWeb Universe: Web-Based, Immersive, Multiuser Molecular Graphics and Modeling.Methods in molecular biology (Clifton, N.J.) · 2026Article
- ExpOmics: a comprehensive web platform empowering biologists with robust multi-omics data analysis capabilities.Bioinformatics (Oxford, England) · 2024Article
- BinaRena: a dedicated interactive platform for human-guided exploration and binning of metagenomes.Microbiome · 2023Article
- escheR: Unified multi-dimensional visualizations with Gestalt principles.bioRxiv : the preprint server for biology · 2023Article
- Graph Visualization: Alternative Models Inspired by Bioinformatics.Sensors (Basel, Switzerland) · 2023Review
- escheR: unified multi-dimensional visualizations with Gestalt principles.Bioinformatics advances · 2023Article
- Exploring microbial functional biodiversity at the protein family level-From metagenomic sequence reads to annotated protein clusters.Frontiers in bioinformatics · 2023Review
- Design X Bioinformatics: a community-driven initiative to connect bioinformatics and design.Journal of integrative bioinformatics · 2022Article
- SwissBioPics-an interactive library of cell images for the visualization of subcellular location data.Database : the journal of biological databases and curation · 2022Article
- Strategies for the Production of Molecular Animations.Frontiers in bioinformatics · 2022Review
- Biomolecule and Bioentity Interaction Databases in Systems Biology: A Comprehensive Review.Biomolecules · 2021Review
- FLAME: A Web Tool for Functional and Literature Enrichment Analysis of Multiple Gene Lists.Biology · 2021Article
- Mechnetor: a web server for exploring protein mechanism and the functional context of genetic variants.Nucleic acids research · 2021Article
- Modeling in the Time of COVID-19: Statistical and Rule-based Mesoscale Models.IEEE transactions on visualization and computer graphics · 2021Article
- Privacy preserving data visualizations.EPJ data science · 2021Article
- Grand Challenges in Bioinformatics Data Visualization.Frontiers in bioinformatics · 2021Article
- bigPint: A Bioconductor visualization package that makes big data pint-sized.PLoS computational biology · 2020Article
1 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
12 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Methods and tools for visualizing biological data have improved considerably over the last decades, but they are still inadequate for some high-throughput data sets. For most users, a key challenge is to benefit from the deluge of data without being overwhelmed by it. This challenge is still largely unfulfilled and will require the development of truly integrated and highly useable tools.
Indexed as
Identifiers
20195254What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.