ReviewNature methods2010
Visualization of multiple alignments, phylogenies and gene family evolution.
Review in Nature methods, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
36 citing papers in PubMed.
- Genomic, Proteomic, and Structural Insights Into the Transition of FtsZ From Thermophiles to Mesophiles Across the Prokaryotic Kingdom.Proteins · 2026Article
- Article
- Interactive Tree of Life (iTOL) v6: recent updates to the phylogenetic tree display and annotation tool.Nucleic acids research · 2024Article
- Parvovirus B19 and Human Parvovirus 4 Encode Similar Proteins in a Reading Frame Overlapping the VP1 Capsid Gene.Viruses · 2024Article
- Assessing 2D visual encoding of 3D spatial connectivity.Frontiers in bioinformatics · 2023Article
- The Hidden Potential of High-Throughput RNA-Seq Re-Analysis, a Case Study for DHDPS, Key Enzyme of the Aspartate-Derived Lysine Biosynthesis Pathway and Its Role in Abiotic and Biotic Stress Responses in Soybean.Plants (Basel, Switzerland) · 2022Article
- Using sound to understand protein sequence data: new sonification algorithms for protein sequences and multiple sequence alignments.BMC bioinformatics · 2021Article
- Grand Challenges in Bioinformatics Data Visualization.Frontiers in bioinformatics · 2021Article
- Replacing the eleven native tryptophans by directed evolution produces an active P-glycoprotein with site-specific, non-conservative substitutions.Scientific reports · 2020Article
- Interactive web-based visualization and sharing of phylogenetic trees using phylogeny.IO.Nucleic acids research · 2019Article
- Visual Analytics of Genomic and Cancer Data: A Systematic Review.Cancer informatics · 2019Review
- bioSyntax: syntax highlighting for computational biology.BMC bioinformatics · 2018Article
- Genetic Analysis of Natural Variation inFrontiers in plant science · 2017Article
- Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees.Nucleic acids research · 2016Article
- Article
- Sequence analysis reveals a conserved extension in the capping enzyme of the alphavirus supergroup, and a homologous domain in nodaviruses.Biology direct · 2015Article
- Continuous Distributed Representation of Biological Sequences for Deep Proteomics and Genomics.PloS one · 2015Article
- Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future.GigaScience · 2015Review
- Integrated visual analysis of protein structures, sequences, and feature data.BMC bioinformatics · 2015Article
- Visualizing time-related data in biology, a review.Briefings in bioinformatics · 2014Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors.
Funding
Abstract
Software for visualizing sequence alignments and trees are essential tools for life scientists. In this review, we describe the major features and capabilities of a selection of stand-alone and web-based applications useful when investigating the function and evolution of a gene family. These range from simple viewers, to systems that provide sophisticated editing and analysis functions. We conclude with a discussion of the challenges that these tools now face due to the flood of next generation sequence data and the increasingly complex network of bioinformatics information sources.
Indexed as
Identifiers
20195253What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.