Evidence map›Paper›PMID 20194784›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2010

Identification and characterization of the furfural and 5-(hydroxymethyl)furfural degradation pathways of Cupriavidus basilensis HMF14.

Frank Koopman, Nick Wierckx, Johannes H de Winde, Harald J Ruijssenaars

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed.

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  19. Utilization of orange peel waste for sustainable amino acid production byFrontiers in bioengineering and biotechnology · 2024
    Article
  20. Whole-Genome Sequence and Fermentation Characteristics ofBioengineering (Basel, Switzerland) · 2023
    Article

21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Frank KoopmanDepartment of Biotechnology, Bio-Based Sustainable Industrial Chemistry (B-Basic), Delft University of Technology, Julianalaan 67, 2628 BC Delft, The Netherlands. f.w.koopman@tudelft.nl
Nick Wierckx
Johannes H de Winde
Harald J Ruijssenaars

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The toxic fermentation inhibitors in lignocellulosic hydrolysates pose significant problems for the production of second-generation biofuels and biochemicals. Among these inhibitors, 5-(hydroxymethyl)furfural (HMF) and furfural are specifically notorious. In this study, we describe the complete molecular identification and characterization of the pathway by which Cupriavidus basilensis HMF14 metabolizes HMF and furfural. The identification of this pathway enabled the construction of an HMF and furfural-metabolizing Pseudomonas putida. The genetic information obtained furthermore enabled us to predict the HMF and furfural degrading capabilities of sequenced bacterial species that had not previously been connected to furanic aldehyde metabolism. These results pave the way for in situ detoxification of lignocellulosic hydrolysates, which is a major step toward improved efficiency of utilization of lignocellulosic feedstock.

Indexed as

Metabolic Networks and PathwaysCupriavidusDNA Transposable ElementsFuraldehydeGenes, BacterialMutagenesisOxidoreductasesPhenotypePseudomonas putida5-hydroxymethylfurfuralDNA Transposable ElementsFuraldehydeOxidoreductases

Identifiers

PMID20194784
PMCPMC2841868

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.