Evidence map›Paper›PMID 20194506›Full record

ArticleThe Journal of biological chemistry2010

Targeting the active site gate to yield hyperactive variants of 5-aminolevulinate synthase.

Thomas Lendrihas, Gregory A Hunter, Gloria C Ferreira

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Article
  3. The yeast ALA synthase C-terminus positively controls enzyme structure and function.Protein science : a publication of the Protein Society · 2023
    Article
  4. Article
  5. Structural Basis for Allostery in PLP-dependent Enzymes.Frontiers in molecular biosciences · 2022
    Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Investigating the bifunctionality of cyclizing and "classical" 5-aminolevulinate synthases.Protein science : a publication of the Protein Society · 2018
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Thomas LendrihasDepartment of Molecular Medicine, College of Medicine, University of South Florida, Tampa, Florida 33612, USA.
Gregory A Hunter
Gloria C Ferreira
University of South Florida · US

Funding

Ferrochelatase: dose porphyrin distortion control metal ion specificity?R01GM080270 · NIGMS · UNIVERSITY OF SOUTH FLORIDA · PI FERREIRA, GLORIA C. · 2007 to 2010
$916k
5-Aminolevulinate Synthase and Heme BiosynthesisR01DK063191 · NIDDK · UNIVERSITY OF SOUTH FLORIDA · PI FERREIRA, GLORIA C · 2004 to 2006
$600k
NIDDK NIH HHS DK63191NIDDK NIH HHS R01 DK063191NIGMS NIH HHS GM080270NIGMS NIH HHS R01 GM080270
6 · The paper itself

Abstract

The rate of porphyrin biosynthesis in mammals is controlled by the activity of the pyridoxal 5'-phosphate-dependent enzyme 5-aminolevulinate synthase (EC 2.3.1.37). Based on the postulate that turnover in this enzyme is controlled by conformational dynamics associated with a highly conserved active site loop, we constructed a variant library by targeting imperfectly conserved noncatalytic loop residues and examined the effects on product and porphyrin production. Functional loop variants of the enzyme were isolated via genetic complementation in Escherichia coli strain HU227. Colony porphyrin fluorescence varied widely when bacterial cells harboring the loop variants were grown on inductive media; this facilitated identification of clones encoding unusually active enzyme variants. Nine loop variants leading to high in vivo porphyrin production were purified and characterized kinetically. Steady state catalytic efficiencies for the two substrates were increased by up to 100-fold. Presteady state single turnover reaction data indicated that the second step of quinonoid intermediate decay, previously assigned as reaction rate-limiting, was specifically accelerated such that in three of the variants this step was no longer kinetically significant. Overall, our data support the postulate that the active site loop controls the rate of product and porphyrin production in vivo and suggest the possibility of an as yet undiscovered means of allosteric regulation.

Indexed as

5-Aminolevulinate SynthetaseAllosteric RegulationBacterial ProteinsCatalysisCatalytic DomainEscherichia coliGenetic Complementation TestKineticsPorphyrinsProtein Structure, SecondaryRecombinant ProteinsRhodobacter capsulatusSubstrate Specificity5-Aminolevulinate SynthetaseBacterial ProteinsPorphyrinsRecombinant Proteins

Identifiers

PMID20194506
PMCPMC2859533
OpenAlexW1971839423

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.