Evidence map›Paper›PMID 20193846›Full record

ArticleCancer genetics and cytogenetics2010

Homozygous deletion of the STK11/LKB1 locus and the generation of novel fusion transcripts in cervical cancer cells.

Michael T McCabe, Doris R Powell, Wei Zhou, Paula M Vertino

Open access · greenAbstract read
In one paragraph

Article in Cancer genetics and cytogenetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Epigenetic Biomarkers for Cervical Cancer Progression: A Scoping Review.International journal of molecular sciences · 2025
    Article
  3. Comprehensively Testing the Function of Missense Variation in thebioRxiv : the preprint server for biology · 2025
    Article
  4. Article
  5. Loss of Lkb1 cooperates with BrafMolecular oncology · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. BeyondPharmaceuticals (Basel, Switzerland) · 2020
    Review
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  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Michael T McCabeDepartment of Radiation Oncology, Emory University School of Medicine, 1365C Clifton Road, Atlanta, GA 30322; The Winship Cancer Institute of Emory University, 1365C Clifton Road, Atlanta, GA 30322.
Doris R Powell
Wei Zhou
Paula M Vertino
Emory University · US

Funding

Targeting Microtubules and HDAC6 in NSCLCP01CA116676 · NCI · EMORY UNIVERSITY · PI KHURI, FADLO RAJA · 2006 to 2012
$8.0M
GENESIS AND CONSEQUENCES OF ABERRANT DNA METHYLATIONR01CA077337 · NCI · EMORY UNIVERSITY · PI VERTINO, PAULA M. · 1998 to 2016
$3.4M
NCI NIH HHS 1P01-CA116676-0002NCI NIH HHS 2R01 CA077337NCI NIH HHS P01 CA116676NCI NIH HHS R01 CA077337
6 · The paper itself

Abstract

The STK11/LKB1 gene encodes a ubiquitously expressed serine/threonine kinase that is mutated in multiple sporadic cancers including non-small cell lung carcinomas, pancreatic cancers, and melanomas. LKB1 plays a role in multiple cellular functions including cell growth, cell cycle progression, metabolism, cell polarity, and migration. To date, only a limited number of studies have assessed the status of LKB1 in cervical cancers. Herein, we investigate DNA methylation, DNA mutation, and transcription at the LKB1 locus in cervical cancer cell lines. We identified homozygous deletions of 25-85kb in the HeLa and SiHa cell lines. Deletion breakpoint analysis in HeLa cells revealed that the deletion resulted from an Alu-recombination-mediated deletion (ARMD) and generated a novel LKB1 fusion transcript driven by an uncharacterized CpG island promoter located approximately 11kb upstream of LKB1. Although the homozygous deletion in SiHa cells removes the entire LKB1 gene and portions of the neighboring genes SBNO2 and c19orf26, this deletion also generates a fusion transcript driven by the c19orf26 promoter and composed of both c19orf26 and SBNO2 sequences. Further analyses of public gene expression and mutation databases suggest that LKB1 and its neighboring genes are frequently dysregulated in primary cervical cancers. Thus, homozygous deletions affecting LKB1 in cervical cancers may generate multiple fusion transcripts involving LKB1, SBNO2, and c19orf26.

Indexed as

Gene DeletionAlu ElementsAMP-Activated Protein Kinase KinasesBase SequenceCell Line, TumorDNA MethylationFemaleGene Expression Regulation, NeoplasticHeLa CellsHumansMolecular Sequence DataMutationOncogene Proteins, FusionProtein Serine-Threonine KinasesRNA, MessengerSequence AlignmentAMP-Activated Protein Kinase KinasesOncogene Proteins, FusionProtein Serine-Threonine KinasesRNA, MessengerSTK11 protein, human

Identifiers

PMID20193846
PMCPMC2837085
OpenAlexW2152820595

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.