Evidence map›Paper›PMID 20193758›Full record

ArticleFree radical biology & medicine2010

DNA-PKcs deficiency leads to persistence of oxidatively induced clustered DNA lesions in human tumor cells.

Prakash Peddi, Charles W Loftin, Jennifer S Dickey, Jessica M Hair, Kara J Burns, Khaled Aziz, Dave C Francisco, Mihalis I Panayiotidis, Olga A Sedelnikova, William M Bonner and 2 more

Abstract read
In one paragraph

Article in Free radical biology & medicine, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 69 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Prakash PeddiDepartment of Biology, Thomas Harriot College of Arts and Sciences, East Carolina University, Greenville, NC 27858, USA.
Charles W Loftin
Jennifer S Dickey
Jessica M Hair
Kara J Burns
Khaled Aziz
Dave C Francisco
Mihalis I Panayiotidis
Olga A Sedelnikova
William M Bonner
Thomas A Winters
Alexandros G Georgakilas
East Carolina University · USNational Cancer Institute · USCenter for Cancer Research · USNational Institutes of Health Clinical Center · USUniversity of Ioannina · GR

Funding

Studies of Histone Functions in Chromatin; H2AX and DNA DSBsZIABC006140 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI BONNER, WILLIAM · 2009 to 2015
$7.8M
Gene-targetted RadiotherapyZ01CL060001 · CLC · CLINICAL CENTER · PI NEUMANN, RONALD · 1997 to 2008
$1.9M
Gene-targetted RadiotherapyZIACL060001 · CLC · CLINICAL CENTER · PI NEUMANN, RONALD · 2009 to 2012
$0k
Intramural NIH HHS Z01 CL060001Intramural NIH HHS Z99 CL999999
6 · The paper itself

Abstract

DNA-dependent protein kinase (DNA-PK) is a key non-homologous-end-joining (NHEJ) nuclear serine/threonine protein kinase involved in various DNA metabolic and damage signaling pathways contributing to the maintenance of genomic stability and prevention of cancer. To examine the role of DNA-PK in processing of non-DSB clustered DNA damage, we have used three models of DNA-PK deficiency, i.e., chemical inactivation of its kinase activity by the novel inhibitors IC86621 and NU7026, knockdown and complete absence of the protein in human breast cancer (MCF-7) and glioblastoma cell lines (MO59-J/K). A compromised DNA-PK repair pathway led to the accumulation of clustered DNA lesions induced by gamma-rays. Tumor cells lacking protein expression or with inhibited kinase activity showed a marked decrease in their ability to process oxidatively induced non-DSB clustered DNA lesions measured using a modified version of pulsed-field gel electrophoresis or single-cell gel electrophoresis (comet assay). In all cases, DNA-PK inactivation led to a higher level of lesion persistence even after 24-72h of repair. We suggest a model in which DNA-PK deficiency affects the processing of these clusters first by compromising base excision repair and second by the presence of catalytically inactive DNA-PK inhibiting the efficient processing of these lesions owing to the failure of DNA-PK to disassociate from the DNA ends. The information rendered will be important for understanding not only cancer etiology in the presence of an NHEJ deficiency but also cancer treatments based on the induction of oxidative stress and inhibition of cluster repair.

Indexed as

AcetophenonesApoptosisBreast NeoplasmsCell Line, TumorChromonesComet AssayDNA-Activated Protein KinaseDNA AdductsDNA RepairDNA Repair-Deficiency DisordersGlioblastomaHumansMorpholinesOxidative StressRNA, Small InterferingSequence Deletion1-(2-hydroxy-4-morpholin-4-ylphenyl)ethanone2-(morpholin-4-yl)benzo(h)chromen-4-oneAcetophenonesChromonesDNA-Activated Protein KinaseDNA AdductsMorpholinesRNA, Small Interfering

Identifiers

PMID20193758
PMCPMC2901171
OpenAlexW2072854810

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.