Evidence map›Paper›PMID 20193695›Full record

ArticleMutation research2010

DNA methylation changes in a human cell model of breast cancer progression.

Sandra V Fernandez, Kara E Snider, Yue-Zhong Wu, Irma H Russo, Christoph Plass, Jose Russo

Open access · greenAbstract read
In one paragraph

Article in Mutation research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 30 citations in OpenAlex.

  1. Review
  2. Article
  3. NRG1 fusions in breast cancer.Breast cancer research : BCR · 2021
    Article
  4. Article
  5. PI(4,5)PProceedings of the National Academy of Sciences of the United States of America · 2020
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  11. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Sandra V FernandezBreast Cancer Research Laboratory, Fox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA 19111, USA. sandra.fernandez@fccc.edu
Kara E Snider
Yue-Zhong Wu
Irma H Russo
Christoph Plass
Jose Russo
Fox Chase Cancer Center · USGerman Cancer Research Center · DEThe Ohio State University · US

Funding

Center for Environment and Mammary Gland DevelopmentU01ES012771 · NIEHS · FOX CHASE CANCER CENTER · PI RUSSO, JOSE · 2003 to 2009
$11.1M
Epigenetic Changes Induced by Estrogens and Xenoestrogens in Breast CancerR21ES015894 · NIEHS · FOX CHASE CANCER CENTER · PI RUSSO, JOSE · 2007 to 2008
$462k
ROOT RESORPTION DUE TO ORTHODONTIC MOVEMENTR21DE015148 · NIDCR · UNIVERSITY OF SOUTHERN CALIFORNIA · PI ZEICHNER-DAVID, MARGARITA · 2004 to 2005
$325k
NCI NIH HHS UO1ES/CA1271NIDCR NIH HHS R21 DE015148NIEHS NIH HHS R21 ES015894NIEHS NIH HHS U01 ES012771PHS HHS R21 ESO15148
6 · The paper itself

Abstract

Epigenetic inactivation of genes by DNA hypermethylation plays an important role in carcinogenesis. An in vitro model of human breast epithelial cell transformation was used to study epigenetic changes induced by estradiol during the neoplastic process. Different stages of tumor initiation and progression are represented in this model being MCF-10F the normal stage; trMCF cells, the transformed stage; bsMCF cells, the invasive stage and, caMCF cells, the tumor stage. Global methylation studies by restriction landmark genomic scanning (RLGS) showed an increased DNA methylation during the in the invasive and tumor stages. Expression studies showed that NRG1 (neuregulin 1), CSS3 (chondroitin sulfate synthase 3) and SNIP (SNAP-25-interacting protein) were downregulated in the invasive and tumor cells. The transformed cells showed low expression of STXBP6 (amysin) compared to the parental cells MCF-10F. The treatment of these cells with the demethylating agent 5-aza-dC alone or in combination with the histone deacetylase inhibitor trichostatin increased the expression of NRG1, STXBP6, CSS3 and SNIP confirming that DNA methylation plays an important role in the regulation of the expression of these genes. The NRG1 exon 1 has a region located between -136 and +79 (considering +1, the translational initiation site) rich in CpG sites that was analyzed by methylation specific PCR (MSP). NRG1 exon 1 showed progressive changes in the methylation pattern associated with the progression of the neoplastic process in this model; NRG1 exon 1 was unmethylated in MCF-10F and trMCF cells, becoming hypermethylated in the invasive (bsMCF) and tumor (caMCF) stages. Studies of human breast tissue samples showed that NRG1 exon 1 was partially methylated in 14 out of 17 (82.4%) invasive carcinomas although it was unmethylated in normal tissues (8 out of 10 normal breast tissue samples). Furthermore, NRG1 exon 1 was partially methylated in 9 out of 14 (64.3%) morphologically normal tissue samples adjacent to invasive carcinomas.

Indexed as

Disease ProgressionDNA MethylationBreast NeoplasmsCell Line, TumorEpigenesis, GeneticFemaleHumansNeuregulin-1Polymerase Chain ReactionNeuregulin-1NRG1 protein, human

Identifiers

PMID20193695
PMCPMC2872054
OpenAlexW2001466882

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.