Evidence map›Paper›PMID 20191040›Full record

ArticleJournal of Korean medical science2010

DNA methylation patterns of ulcer-healing genes associated with the normal gastric mucosa of gastric cancers.

Seung-Jin Hong, Jung-Hwan Oh, Yu-Chae Jung, Young-Ho Kim, Sung-Ja Kim, Seok-Jin Kang, Eun-Joo Seo, Sang-Wook Choi, Moo-Il Kang, Mun-Gan Rhyu

Open access · goldAbstract read
In one paragraph

Article in Journal of Korean medical science, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. DNA methylation and microRNAs in cancer.World journal of gastroenterology · 2012
    Review
  5. Effect of ageing on colonic mucosal regeneration.World journal of gastroenterology · 2011
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Seung-Jin HongDepartment of Microbiology, College of Medicine, The Catholic University of Korea, Seoul, Korea.
Jung-Hwan Oh
Yu-Chae Jung
Young-Ho Kim
Sung-Ja Kim
Seok-Jin Kang
Eun-Joo Seo
Sang-Wook Choi
Moo-Il Kang
Mun-Gan Rhyu
Catholic University of Korea · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recent evidence suggests that gastric mucosal injury induces adaptive changes in DNA methylation. In this study, the methylation status of the key tissue-specific genes in normal gastric mucosa of healthy individuals and cancer patients was evaluated. The methylation-variable sites of 14 genes, including ulcer-healing genes (TFF1, TFF2, CDH1, and PPARG), were chosen from the CpG-island margins or non-island CpGs near the transcription start sites. The healthy individuals as well as the normal gastric mucosa of 23 ulcer, 21 non-invasive cancer, and 53 cancer patients were examined by semiquantitative methylation-specific polymerase chain reaction (PCR) analysis. The ulcer-healing genes were concurrently methylated with other genes depending on the presence or absence of CpG-islands in the normal mucosa of healthy individuals. Both the TFF2 and PPARG genes were frequently undermethylated in ulcer patients. The over- or intermediate-methylated TFF2 and undermethylated PPARG genes was more common in stage-1 cancer patients (71%) than in healthy individuals (10%; odds ratio [OR], 21.9) and non-invasive cancer patients (21%; OR, 8.9). The TFF2-PPARG methylation pattern of cancer patients was stronger in the older-age group (> or =55 yr; OR, 43.6). These results suggest that the combined methylation pattern of ulcer-healing genes serves as a sensitive marker for predicting cancer-prone gastric mucosa.

Indexed as

DNA MethylationGastric MucosaStomach NeoplasmsStomach UlcerAntigens, CDBiomarkersCadherinsCpG IslandsFemaleGene Expression Regulation, NeoplasticGrowth SubstancesHumansMaleMiddle AgedNeoplasm InvasivenessPeptidesAntigens, CDBiomarkersCadherinsCDH1 protein, humanGrowth SubstancesPeptidesPPAR gammaTFF1 protein, humanTFF2 protein, humanTrefoil Factor-1Trefoil Factor-2Tumor Suppressor ProteinsDNA MethylationNeoplasmsNon-Invasive CancerStomachUlcer

Identifiers

PMID20191040
PMCPMC2826743
OpenAlexW2150835051

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.