Evidence map›Paper›PMID 20190752›Full record

ArticleNature genetics2010

Multiple common variants for celiac disease influencing immune gene expression.

Patrick C A Dubois, Gosia Trynka, Lude Franke, Karen A Hunt, Jihane Romanos, Alessandra Curtotti, Alexandra Zhernakova, Graham A R Heap, Róza Adány, Arpo Aromaa and 57 more

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Nature genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 591 papers, 13 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
591citing papers in PubMed, 13 pooled it
60.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

591 citing papers in PubMed, 13 syntheses or guidelines pooled it, 1,043 citations in OpenAlex.

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  10. The Shared Genetic Architectures Between Lung Cancer and Multiple Polygenic Phenotypes in Genome-Wide Association Studies.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2021
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531 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

67 authors at 20 institutions in 9 countries.

Patrick C A DuboisBlizard Institute of Cell and Molecular Science, Barts and The London School of Medicine and Dentistry, Queen Mary University of London, London, UK.
Gosia Trynka
Lude Franke
Karen A Hunt
Jihane Romanos
Alessandra Curtotti
Alexandra Zhernakova
Graham A R Heap
Róza Adány
Arpo Aromaa
Maria Teresa Bardella
Leonard H van den Berg
Nicholas A Bockett
Emilio G de la Concha
Bárbara Dema
Rudolf S N Fehrmann
Miguel Fernández-Arquero
Szilvia Fiatal
Elvira Grandone
Peter M Green
Harry J M Groen
Rhian Gwilliam
Roderick H J Houwen
Sarah E Hunt
Katri Kaukinen
Dermot Kelleher
Ilma Korponay-Szabo
Kalle Kurppa
Padraic MacMathuna
Markku Mäki
Maria Cristina Mazzilli
Owen T McCann
M Luisa Mearin
Charles A Mein
Muddassar M Mirza
Vanisha Mistry
Barbara Mora
Katherine I Morley
Chris J Mulder
Joseph A Murray
Concepción Núñez
Elvira Oosterom
Roel A Ophoff
Isabel Polanco
Leena Peltonen
Mathieu Platteel
Anna Rybak
Veikko Salomaa
Joachim J Schweizer
Maria Pia Sperandeo
Greetje J Tack
Graham Turner
Jan H Veldink
Wieke H M Verbeek
Rinse K Weersma
Victorien M Wolters
Elena Urcelay
Bozena Cukrowska
Luigi Greco
Susan L Neuhausen
Ross McManus
Donatella Barisani
Panos Deloukas
Jeffrey C Barrett
Paivi Saavalainen
Cisca Wijmenga
David A van Heel
University Medical Center Groningen · NLQueen Mary University of London · GBWellcome Sanger Institute · GBHospital Clínico San Carlos · ESUniversity Medical Center Utrecht · NLAmsterdam UMC Location Vrije Universiteit Amsterdam · NLTampere University Hospital · FITrinity College Dublin · IEUniversity of Debrecen · HUChildren's Memorial Health Institute · PLFinnish Institute for Health and Welfare · FIGuy's Hospital · GBLeiden University · NLSapienza University of Rome · ITUniversity of Naples Federico II · ITCasa Sollievo della Sofferenza · ITCity of Hope · USHospital Universitario La Paz · ESMater Misericordiae University Hospital · IEMayo Clinic · US

Funding

Type 1 Diabetes Genetics ConsortiumU01DK062418 · NIDDK · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI RICH, STEPHEN S. · 2002 to 2007
$59.8M
EPIDEMIOLOGY OF CELIAC DISEASE--A POPULATION BASED STUDYR01DK057892 · NIDDK · MAYO CLINIC ROCHESTER · PI MURRAY, JOSEPH A · 2000 to 2010
$3.9M
Genome-Wide Association Study in Celiac DiseaseR01DK081645 · NIDDK · UNIVERSITY OF CALIFORNIA-IRVINE · PI GARNER, CHAD P, NEUHAUSEN, SUSAN L. · 2009 to 2011
$2.8M
MAPPING OF NON-HLA LOCI FOR GLUTEN SENSITIVE ENTEROPATHYR01DK050678 · NIDDK · UNIVERSITY OF UTAH · PI NEUHAUSEN, SUSAN L. · 1996 to 2005
$2.7M
Genetics of Gene Expression and Gene Mapping for Amytrophic Lateral SclerosisR01NS058980 · NINDS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI OPHOFF, ROEL A · 2008 to 2012
$1.6M
A HLA Mouse Model for Gluten Sensitivity and EnteropathyR01DK071003 · NIDDK · MAYO CLINIC ROCHESTER · PI MURRAY, JOSEPH A · 2006 to 2009
$1.1M
A HLA Mouse Model for Gluten Sensitivity and EnteropathyR56DK071003 · NIDDK · MAYO CLINIC ROCHESTER · PI MURRAY, JOSEPH A · 2010 to 2010
$394k
Medical Research Council G0700545Medical Research Council G0700545(82277)NIDDK NIH HHS DK050678NIDDK NIH HHS DK071003NIDDK NIH HHS DK081645NIDDK NIH HHS DK57892NIDDK NIH HHS R01 DK050678NIDDK NIH HHS R01 DK057892NIDDK NIH HHS R01 DK071003NIDDK NIH HHS R01 DK081645NIDDK NIH HHS R56 DK071003NIDDK NIH HHS U01 DK062418NINDS NIH HHS NS058980NINDS NIH HHS R01 NS058980Wellcome Trust 084743
6 · The paper itself

Abstract

We performed a second-generation genome-wide association study of 4,533 individuals with celiac disease (cases) and 10,750 control subjects. We genotyped 113 selected SNPs with P(GWAS) < 10(-4) and 18 SNPs from 14 known loci in a further 4,918 cases and 5,684 controls. Variants from 13 new regions reached genome-wide significance (P(combined) < 5 x 10(-8)); most contain genes with immune functions (BACH2, CCR4, CD80, CIITA-SOCS1-CLEC16A, ICOSLG and ZMIZ1), with ETS1, RUNX3, THEMIS and TNFRSF14 having key roles in thymic T-cell selection. There was evidence to suggest associations for a further 13 regions. In an expression quantitative trait meta-analysis of 1,469 whole blood samples, 20 of 38 (52.6%) tested loci had celiac risk variants correlated (P < 0.0028, FDR 5%) with cis gene expression.

Indexed as

Genes, MHC Class IPolymorphism, Single NucleotideCase-Control StudiesCeliac DiseaseGene ExpressionGene Expression ProfilingGenome-Wide Association StudyHumansMeta-Analysis as TopicRisk

Identifiers

PMID20190752
PMCPMC2847618
OpenAlexW2112409097

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.