Evidence map›Paper›PMID 20190077›Full record

ArticleThe Plant cell2010

Arabidopsis RNA-dependent RNA polymerases and dicer-like proteins in antiviral defense and small interfering RNA biogenesis during Turnip Mosaic Virus infection.

Hernan Garcia-Ruiz, Atsushi Takeda, Elisabeth J Chapman, Christopher M Sullivan, Noah Fahlgren, Katherine J Brempelis, James C Carrington

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in The Plant cell, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 271 papers.

0numbers the graph read from it
0cells of the map it votes in
271citing papers in PubMed
41.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

271 citing papers in PubMed, 506 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Article
  19. Article
  20. Review

211 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Hernan Garcia-RuizCenter for Genome Research and Biocomputing, Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331.
Atsushi Takeda
Elisabeth J Chapman
Christopher M Sullivan
Noah Fahlgren
Katherine J Brempelis
James C Carrington
Oregon State University · US

Funding

Genetic Analysis of RNA Virus-Host InteractionR37AI043288 · NIAID · OREGON STATE UNIVERSITY · PI CARRINGTON, JAMES C · 2008 to 2017
$3.1M
GENETIC ANALYSIS OF RNA VIRUS-HOST INTERACTIONR01AI043288 · NIAID · WASHINGTON STATE UNIVERSITY · PI CARRINGTON, JAMES C · 1998 to 2007
$1.7M
GENETIC ANALYSIS OF RNA VIRUS-HOST INTERACTIONR21AI043288 · NIAID · WASHINGTON STATE UNIVERSITY · PI CARRINGTON, JAMES C · 1997 to 1997
–
NIAID NIH HHS AI43288NIAID NIH HHS R01 AI043288NIAID NIH HHS R21 AI043288NIAID NIH HHS R37 AI043288
6 · The paper itself

Abstract

Plants respond to virus infections by activation of RNA-based silencing, which limits infection at both the single-cell and system levels. Viruses encode RNA silencing suppressor proteins that interfere with this response. Wild-type Arabidopsis thaliana is immune to silencing suppressor (HC-Pro)-deficient Turnip mosaic virus, but immunity was lost in the absence of DICER-LIKE proteins DCL4 and DCL2. Systematic analysis of susceptibility and small RNA formation in Arabidopsis mutants lacking combinations of RNA-dependent RNA polymerase (RDR) and DCL proteins revealed that the vast majority of virus-derived small interfering RNAs (siRNAs) were dependent on DCL4 and RDR1, although full antiviral defense also required DCL2 and RDR6. Among the DCLs, DCL4 was sufficient for antiviral silencing in inoculated leaves, but DCL2 and DCL4 were both involved in silencing in systemic tissues (inflorescences). Basal levels of antiviral RNA silencing and siRNA biogenesis were detected in mutants lacking RDR1, RDR2, and RDR6, indicating an alternate route to form double-stranded RNA that does not depend on the three previously characterized RDR proteins.

Indexed as

ArabidopsisDNA-Directed RNA PolymerasesMutationPlant VirusesRibonuclease IIIRNA, Small InterferingDNA-Directed RNA PolymerasesRibonuclease IIIRNA, Small Interfering

Identifiers

PMID20190077
PMCPMC2845422
OpenAlexW2143430694

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.