Evidence map›Paper›PMID 20186806›Full record

ArticleAmerican journal of medical genetics. Part A2010

Investigation of a patient with a partial trisomy 16q including the fat mass and obesity associated gene (FTO): fine mapping and FTO gene expression study.

Linda van den Berg, Henriette Delemarre-van de Waal, Joan C Han, Bauke Ylstra, Paul Eijk, Maria Nesterova, Peter Heutink, Constantine A Stratakis

Open access · greenAbstract readCase Reports
In one paragraph

Article in American journal of medical genetics. Part A, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 53 citations in OpenAlex.

  1. Review
  2. New Insights on the Role ofFrontiers in molecular biosciences · 2020
    Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
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  9. FTO levels affect RNA modification and the transcriptome.European journal of human genetics : EJHG · 2013
    Article
  10. Review
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Linda van den BergDepartment of Pediatrics, Leiden University Medical Center, Leiden, the Netherlands.
Henriette Delemarre-van de Waal
Joan C Han
Bauke Ylstra
Paul Eijk
Maria Nesterova
Peter Heutink
Constantine A Stratakis
Amsterdam UMC Location VUmc · NLNational Institutes of Health · USEunice Kennedy Shriver National Institute of Child Health and Human Development · USLeiden University Medical Center · NL

Funding

Molecular Genetics Of Adrenocortical Tumors And Related DisordersZIAHD000642 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI STRATAKIS, CONSTANTINE A. · 2009 to 2011
$9.6M
Neuroendocrine Regulation of Metabolism and NeurocognitionZIAHD008898 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI HAN, JOAN C. · 2010 to 2014
$1.4M
Intramural NIH HHS ZIA HD000642
6 · The paper itself

Abstract

A female patient with a partial trisomy 16q was described previously. Her clinical characteristics included obesity, severe anisomastia, moderate to severe mental retardation, attention deficit hyperactivity disorder, dysmorphic facies, and contractions of the small joints. In this article, we describe a more detailed analysis of the genetic anomaly in this patient. We were particularly interested in the involvement of the fat mass and obesity associated gene (FTO) in her duplication. Single nucleotide polymorphisms in FTO have been associated with obesity. The breakpoints of the duplication were precisely mapped using high-resolution oligonucleotide array comparative genomic hybridization (CGH). We found that the duplication spans 11.45 Mb on 16q11.2 to 16q13 and it includes FTO. The increased copy number of FTO was confirmed with a qPCR on genomic DNA of the patient. We investigated the influence of the increased FTO copy number on FTO gene expression in immortalized lymphocytes from the patient using qPCR. No evidence of increased FTO expression was detected in the patient's lymphocytes. We discuss these findings and we review clinical findings in patients with overlapping 16q duplications to determine the relationship between increased FTO copy number and obesity. Our review suggests that duplication of the FTO gene does not necessarily result in obesity.

Indexed as

TrisomyAdultAlpha-Ketoglutarate-Dependent Dioxygenase FTOBase SequenceBreastChromosome MappingChromosomes, Human, Pair 16Comparative Genomic HybridizationDNA PrimersFemaleGene DosageGene ExpressionHumansLymphocytesObesityOligonucleotide Array Sequence AnalysisAlpha-Ketoglutarate-Dependent Dioxygenase FTODNA PrimersFTO protein, humanProteins

Identifiers

PMID20186806
PMCPMC3031344
OpenAlexW2136530026

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.