Evidence map›Paper›PMID 20182695›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2010

Three highly similar formate dehydrogenase genes located in the vicinity of the B4 resistance gene cluster are differentially expressed under biotic and abiotic stresses in Phaseolus vulgaris.

Perrine David, Catherine Colas des Francs-Small, Mireille Sévignac, Vincent Thareau, Catherine Macadré, Thierry Langin, Valérie Geffroy

Abstract read
PubMed Publisher
In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
5.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Article
  3. Stress response of NADEnvironmental science and pollution research international · 2018
    Article
  4. Article
  5. Germination and Early Seedling Development inFrontiers in plant science · 2018
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Molybdenum and tungsten-dependent formate dehydrogenases.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2015
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Cytogenetic map of common bean (Phaseolus vulgaris L.).Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2010
    Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Perrine DavidInstitut de Biotechnologie des Plantes, UMR-CNRS 8618, bât. 630, Université Paris-Sud, 91405, Orsay, France.
Catherine Colas des Francs-Small
Mireille Sévignac
Vincent Thareau
Catherine Macadré
Thierry Langin
Valérie Geffroy
Centre National de la Recherche Scientifique · FRUniversité Paris-Sud · FRARC Centre of Excellence in Plant Energy Biology · AUInstitut National de la Recherche Agronomique du Niger · NE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In higher plants, formate dehydrogenase (FDH, EC1.2.1.2.) catalyzes the NAD-linked oxidation of formate to CO(2), and FDH transcript accumulation has been reported after various abiotic stresses. By sequencing a Phaseolus vulgaris BAC clone encompassing a CC-NBS-LRR gene rich region of the B4 resistance gene cluster, we identified three FDH-encoding genes. FDH is present as a single copy gene in the Arabidopsis thaliana genome, and public database searches confirm that FDH is a low copy gene in plant genomes, since only 33 FDH homologs were identified from 27 plant species. Three independent prediction programs (Predotar, TargetP and Mitoprot) used on this large subset of 33 plant FDHs, revealed that mitochondrial localization of FDH might be the rule in higher plants. A phylogenetic analysis suggests a scenario of local FDH gene duplication in an ancestor of the Phaseoleae followed by another more recent duplication event after bean/soybean divergence. The expression levels of two common bean FDH genes under different treatments were investigated by quantitative RT-PCR analysis. FDH genes are differentially up-regulated after biotic and abiotic stresses (infection with the fungus Colletotrichum lindemuthianum, and dark treatment, respectively). The present study provides the first report of FDH transcript accumulation after biotic stress, suggesting the involvement of FDH in the pathogen resistance process.

Indexed as

Gene Expression Regulation, PlantFormate DehydrogenasesGenes, PlantGenome, PlantImmunity, InnateMolecular Sequence DataMultigene FamilyPhaseolusPhylogenyPlant ProteinsSequence Analysis, DNAStress, PhysiologicalFormate DehydrogenasesPlant Proteins

Identifiers

PMID20182695
OpenAlexW1980998612

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.