Evidence map›Paper›PMID 20181839›Full record

ArticleInvestigative ophthalmology & visual science2010

Alterations of the 5'untranslated region of SLC16A12 lead to age-related cataract.

Jurian Zuercher, John Neidhardt, Istvan Magyar, Stephan Labs, Anthony T Moore, Felix C Tanner, Naushin Waseem, Daniel F Schorderet, Francis L Munier, Shomi Bhattacharya and 2 more

Open access · greenAbstract read
In one paragraph

Article in Investigative ophthalmology & visual science, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
  2. Through theGenes · 2024
    Review
  3. Article
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  8. Review
  9. Observational
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  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Molecular Genetics of Cataract.Progress in molecular biology and translational science · 2015
    Review
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Jurian ZuercherDivision of Medical Molecular Genetics and Gene Diagnostics, Institute of Medical Genetics, University of Zurich, Zurich, Switzerland.
John Neidhardt
Istvan Magyar
Stephan Labs
Anthony T Moore
Felix C Tanner
Naushin Waseem
Daniel F Schorderet
Francis L Munier
Shomi Bhattacharya
Wolfgang Berger
Barbara Kloeckener-Gruissem
University of Zurich · CHUniversity College London · GBÉcole Polytechnique Fédérale de Lausanne · CHHôpital Ophtalmique Jules-Gonin · CH

Funding

Wellcome Trust
6 · The paper itself

Abstract

PURPOSE. Knowledge of genetic factors predisposing to age-related cataract is very limited. The aim of this study was to identify DNA sequences that either lead to or predispose for this disease. METHODS. The candidate gene SLC16A12, which encodes a solute carrier of the monocarboxylate transporter family, was sequenced in 484 patients with cataract (134 with juvenile cataract, 350 with age-related cataract) and 190 control subjects. Expression studies included luciferase reporter assay and RT-PCR experiments. RESULTS. One patient with age-related cataract showed a novel heterozygous mutation (c.-17A>G) in the 5'untranslated region (5'UTR). This mutation is in cis with the minor G-allele of the single nucleotide polymorphism (SNP) rs3740030 (c.-42T/G), also within the 5'UTR. Using a luciferase reporter assay system, a construct with the patient's haplotype caused a significant upregulation of luciferase activity. In comparison, the SNP G-allele alone promoted less activity, but that amount was still significantly higher than the amount of the common T-allele. Analysis of SLC16A12 transcripts in surrogate tissue demonstrated striking allele-specific differences causing 5'UTR heterogeneity with respect to sequence and quantity. These differences in gene expression were mirrored in an allele-specific predisposition to age-related cataract, as determined in a Swiss population (odds ratio approximately 2.2; confidence intervals, 1.23-4.3). CONCLUSIONS. The monocarboxylate transporter SLC16A12 may contribute to age-related cataract. Sequences within the 5'UTR modulate translational efficiency with pathogenic consequences.

Indexed as

5' Untranslated RegionsAgedAgingCataractCell LineCloning, MolecularDNA PrimersFemaleGene Expression RegulationGenetic Predisposition to DiseaseGenetic VectorsHumansMonocarboxylic Acid TransportersMuscle, Smooth, VascularMutationPlasmids5' Untranslated RegionsDNA PrimersMonocarboxylic Acid TransportersSLC16A12 protein, human

Identifiers

PMID20181839
PMCPMC2904002
OpenAlexW1980694437

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.