ArticleBMC genomics2010
Flux of transcript patterns during soybean seed development.
Article in BMC genomics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.
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Who cites it
36 citing papers in PubMed, 64 citations in OpenAlex.
- Integrative Transcriptomic Analysis and Co-Expression Network Characterization of Soybean Developmental Tissues.Plants (Basel, Switzerland) · 2026Article
- Metabolic flux analysis to increase oil in seeds.Plant physiology · 2025Review
- Transcriptome analysis and identification of abscisic acid and gibberellin-related genes during seed development of alfalfa (Medicago sativa L.).BMC genomics · 2022Article
- Seed Development and Protein Accumulation Patterns in Faba Bean (Journal of agricultural and food chemistry · 2022Article
- Multi-Omics Techniques for Soybean Molecular Breeding.International journal of molecular sciences · 2022Review
- Transcriptome analysis of genes involved in starch biosynthesis in developing Chinese chestnut (Castanea mollissima Blume) seed kernels.Scientific reports · 2021Article
- Analysis of Spatio-Temporal Transcriptome Profiles of Soybean (International journal of molecular sciences · 2020Article
- Insight Into the Prospects for the Improvement of Seed Starch in Legume-A Review.Frontiers in plant science · 2019Review
- Genome-wide discovery of DNA polymorphisms among chickpea cultivars with contrasting seed size/weight and their functional relevance.Scientific reports · 2018Article
- Dissecting genomic hotspots underlying seed protein, oil, and sucrose content in an interspecific mapping population of soybean using high-density linkage mapping.Plant biotechnology journal · 2018Article
- Exploring the fate of mRNA in aging seeds: protection, destruction, or slow decay?Journal of experimental botany · 2018Article
- Temporal transcriptome profiling of developing seeds reveals a concerted gene regulation in relation to oil accumulation in Pongamia (Millettia pinnata).BMC plant biology · 2018Article
- Ribosome profiling reveals changes in translational status of soybean transcripts during immature cotyledon development.PloS one · 2018Article
- Physiological and transcriptomic responses in the seed coat of field-grown soybean (Glycine max L. Merr.) to abiotic stress.BMC plant biology · 2017Article
- Global transcriptome analysis and identification of genes involved in nutrients accumulation during seed development of rice tartary buckwheat (Fagopyrum Tararicum).Scientific reports · 2017Article
- Identification of regulatory networks and hub genes controlling soybean seed set and size using RNA sequencing analysis.Journal of experimental botany · 2017Article
- Whole genome-wide transcript profiling to identify differentially expressed genes associated with seed field emergence in two soybean low phytate mutants.BMC plant biology · 2017Article
- Molecular characterization of the acquisition of longevity during seed maturation in soybean.PloS one · 2017Article
- Extension of oil biosynthesis during the mid-phase of seed development enhances oil content in Arabidopsis seeds.Plant biotechnology journal · 2016Article
- Transcriptome Profile of Near-Isogenic Soybean Lines for β-Conglycinin α-Subunit Deficiency during Seed Maturation.PloS one · 2016Article
Corrections and comments
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Authors and funding
3 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundTo understand gene expression networks leading to functional properties of the soybean seed, we have undertaken a detailed examination of soybean seed development during the stages of major accumulation of oils, proteins, and starches, as well as the desiccating and mature stages, using microarrays consisting of up to 27,000 soybean cDNAs. A subset of these genes on a highly-repetitive 70-mer oligonucleotide microarray was also used to support the results.
resultsIt was discovered that genes related to cell growth and maintenance processes, as well as energy processes like photosynthesis, decreased in expression levels as the cotyledons approached the mature, dry stage. Genes involved with some storage proteins had their highest expression levels at the stage of highest fresh weight. However, genes encoding many transcription factors and DNA binding proteins showed higher expression levels in the desiccating and dry seeds than in most of the green stages.
conclusionsData on 27,000 cDNAs have been obtained over five stages of soybean development, including the stages of major accumulation of agronomically-important products, using two different types of microarrays. Of particular interest are the genes found to peak in expression at the desiccating and dry seed stages, such as those annotated as transcription factors, which may indicate the preparation of pathways that will be needed later in the early stages of imbibition and germination.
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