Evidence map›Paper›PMID 20180000›Full record

ArticleJournal of bioenergetics and biomembranes2010

Unimolecular study of the interaction between the outer membrane protein OmpF from E. coli and an analogue of the HP(2-20) antimicrobial peptide.

Aurelia Apetrei, Alina Asandei, Yoonkyung Park, Kyung-Soo Hahm, Mathias Winterhalter, Tudor Luchian

Abstract read
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In one paragraph

Article in Journal of bioenergetics and biomembranes, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.0field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Interaction of Tryptophan- and Arginine-Rich Antimicrobial Peptide withInternational journal of molecular sciences · 2023
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  4. Article
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  6. Observational
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  8. Review
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  14. Article
  15. Directed epitope delivery across the Escherichia coli outer membrane through the porin OmpF.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Aurelia ApetreiFaculty of Physics, Laboratory of Biophysics and Medical Physics, Alexandru I. Cuza' University, Blvd. Carol I, No. 11, Iasi, 700506, Romania.
Alina Asandei
Yoonkyung Park
Kyung-Soo Hahm
Mathias Winterhalter
Tudor Luchian
Alexandru Ioan Cuza University · ROChosun University · KRConstructor University · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Little is known on antimicrobial peptide permeation through outer membrane channels in gram-negative bacteria. Herein, we probed at a single-molecule level the interaction of two different peptides, magainin 2 and HPA3P with OmpF from E. coli. HPA3P is an analogue of the antimicrobial peptide HP(2-20) isolated from the N-terminal region of the Helicobacter pylori ribosomal protein. Our data show that the shorter and more charged HPA3P peptide is more accessible to the inner volume of the OmpF than magainin 2. We demonstrate the ability of HPA3P peptides to interact with OmpF in a voltage- and concentration-dependent manner, which does not rule out a novel mechanism by which such peptides could reach the periplasmic space of gram-negative bacteria. Unexpectedly, we found that increasing the applied voltage led to an increase of the residence time of HPA3P peptide inside the pore, possibly reflecting electric field-induced changes in pore and peptide geometry.

Indexed as

Models, MolecularAmino Acid SequenceBacterial Outer Membrane ProteinsElectrophysiologyEscherichia coliEscherichia coli ProteinsMolecular Sequence DataPeptide FragmentsPorinsRibosomal ProteinsBacterial Outer Membrane ProteinsEscherichia coli ProteinsHPA3 peptideOmpF proteinPeptide FragmentsPorinsRibosomal Proteins

Identifiers

PMID20180000
OpenAlexW1999513029

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.