Evidence map›Paper›PMID 20179299›Full record

ArticleCancer prevention research (Philadelphia, Pa.)2010

Effects of cigarette smoke on the human oral mucosal transcriptome.

Jay O Boyle, Zeynep H Gümüs, Ashutosh Kacker, Vishal L Choksi, Jennifer M Bocker, Xi Kathy Zhou, Rhonda K Yantiss, Duncan B Hughes, Baoheng Du, Benjamin L Judson and 2 more

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Cancer prevention research (Philadelphia, Pa.), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 89 papers.

0numbers the graph read from it
0cells of the map it votes in
89citing papers in PubMed
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

89 citing papers in PubMed, 172 citations in OpenAlex.

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  13. AberrantBiomedicines · 2023
    Article
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  16. International journal of molecular sciences · 2022
    Review
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29 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Jay O BoyleDepartment of Surgery (Head and Neck Service),Memorial Sloan-Kettering Cancer Center, New York, NY, USA.
Zeynep H Gümüs
Ashutosh Kacker
Vishal L Choksi
Jennifer M Bocker
Xi Kathy Zhou
Rhonda K Yantiss
Duncan B Hughes
Baoheng Du
Benjamin L Judson
Kotha Subbaramaiah
Andrew J Dannenberg
Cornell University · USMemorial Sloan Kettering Cancer Center · US

Funding

VIRAL MALIGNANCYP30CA023100 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DIANE M SIMEONE · 1985 to 2026
$124.9M
CTSA INFRASTRUCTURE FOR PEDIATRIC RESEARCHUL1RR024996 · NCRR · WEILL MEDICAL COLL OF CORNELL UNIV · PI IMPERATO-MCGINLEY, JULIANNE L · 2007 to 2011
$49.6M
TARGETING COX-2 AND EGFR SIGNALING IN ORAL CARCINOGENESISP01CA106451 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI LIPPMAN, SCOTT M · 2004 to 2009
$8.3M
HEAD AND NECK TRAINING PROGRAM SURGICAL ONCOLOGYT32CA009685 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI FAGIN, JAMES A, WONG, RICHARD J · 1992 to 2022
$3.6M
Collaborative Program in Nutrition and Cancer Prevention (PNCP)R25CA105012 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI CUNNINGHAM-RUNDLES, SUSANNA · 2006 to 2010
$2.3M
NCI NIH HHS P01 CA106451NCI NIH HHS P30 CA023100NCI NIH HHS R25 CA105012NCI NIH HHS T32 CA009685NCI NIH HHS T32 CA09685NCRR NIH HHS UL1 RR024996NCRR NIH HHS UL1-RR024996
6 · The paper itself

Abstract

Use of tobacco is responsible for approximately 30% of all cancer-related deaths in the United States, including cancers of the upper aerodigestive tract. In the current study, 40 current and 40 age- and gender-matched never smokers underwent buccal biopsies to evaluate the effects of smoking on the transcriptome. Microarray analyses were carried out using Affymetrix HGU133 Plus 2 arrays. Smoking altered the expression of numerous genes: 32 genes showed increased expression and 9 genes showed reduced expression in the oral mucosa of smokers versus never smokers. Increases were found in genes involved in xenobiotic metabolism, oxidant stress, eicosanoid synthesis, nicotine signaling, and cell adhesion. Increased numbers of Langerhans cells were found in the oral mucosa of smokers. Interestingly, smoking caused greater induction of aldo-keto reductases, enzymes linked to polycyclic aromatic hydrocarbon-induced genotoxicity, in the oral mucosa of women than men. Striking similarities in expression changes were found in oral compared with the bronchial mucosa. The observed changes in gene expression were compared with known chemical signatures using the Connectivity Map database and suggested that geldanamycin, a heat shock protein 90 inhibitor, might be an antimimetic of tobacco smoke. Consistent with this prediction, geldanamycin caused dose-dependent suppression of tobacco smoke extract-mediated induction of CYP1A1 and CYP1B1 in vitro. Collectively, these results provide new insights into the carcinogenic effects of tobacco smoke, support the potential use of oral epithelium as a surrogate tissue in future lung cancer chemoprevention trials, and illustrate the potential of computational biology to identify chemopreventive agents.

Indexed as

Gene Expression ProfilingBiomarkers, TumorBlotting, WesternBronchiCase-Control StudiesFemaleGene Expression RegulationHumansImmunoenzyme TechniquesLangerhans CellsMaleMiddle AgedMouth MucosaOligonucleotide Array Sequence AnalysisReverse Transcriptase Polymerase Chain ReactionRNA, MessengerBiomarkers, TumorRNA, Messenger

Identifiers

PMID20179299
PMCPMC2833216
OpenAlexW2128055045

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.