Evidence map›Paper›PMID 20177144›Full record

ArticleExperimental & molecular medicine2010

Differential alternative splicing of human transglutaminase 4 in benign prostate hyperplasia and prostate cancer.

Sung-Yup Cho, Kyungho Choi, Ju-Hong Jeon, Chai-Wan Kim, Dong-Myung Shin, Jong Bouk Lee, Sang Eun Lee, Choung-Soo Kim, Jeong-Soo Park, Eui Man Jeong and 3 more

Open access · goldAbstract read
In one paragraph

Article in Experimental & molecular medicine, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. TGM4: an immunogenic prostate-restricted antigen.Journal for immunotherapy of cancer · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Sung-Yup ChoDepartment of Biochemistry and Molecular Biology, Aging and Apoptosis Research Center (AARC), Seoul National University College of Medicine, Seoul 110-799, Korea.
Kyungho Choi
Ju-Hong Jeon
Chai-Wan Kim
Dong-Myung Shin
Jong Bouk Lee
Sang Eun Lee
Choung-Soo Kim
Jeong-Soo Park
Eui Man Jeong
Gi-Yong Jang
Kye-Yong Song
In-Gyu Kim
Seoul National University · KRChung-Ang University · KRNational Cancer Center · KRNew Generation University College · ETUniversity of Ulsan · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transglutaminase 4 is a member of enzyme family that catalyzes calcium-dependent posttranslational modification of proteins. Although transglutaminase 4 has been shown to have prostate-restricted expression pattern, little is known about the biological function of transglutaminase 4 in human. To gain insight into its role in prostate, we analyzed the expression status of human transglutaminase 4 in benign prostate hyperplasia (BPH) and prostate cancer (PCa). Unexpectedly, RT-PCR and nucleotide sequence analysis showed four alternative splicing variants of transglutaminase 4: transglutaminase 4-L, -M (-M1 and -M2) and -S. The difference between transglutaminase 4-M1 and -M2 is attributed to splicing sites, but not nucleotide size. The deduced amino acid sequences showed that transglutaminase 4-L, -M1 and -M2 have correct open reading frames, whereas transglutaminase 4-S has a truncated reading frame. RT-PCR analysis of clinical samples revealed that transglutaminase 4-M and -S were detected in all tested prostate tissue (80 BPH and 48 PCa). Interestingly, transglutaminase 4-L was found in 56% of BPH (45 out of 80) and only in 15% of PCa (7 out of 48). However, transglutaminase 4-L expression did not correlate with serum prostate-specific antigen (PSA) level, prostate volumes or PSA densities. These results will provide a clue to future investigation aiming at delineating physiological and pathological roles of human transglutaminase 4.

Indexed as

AgedAlternative SplicingAmino Acid SequenceBase SequenceGene Expression Regulation, NeoplasticHeLa CellsHumansIsoenzymesMaleMolecular Sequence DataProstatic HyperplasiaProstatic NeoplasmsSaccharomyces cerevisiaeTransglutaminasesIsoenzymestransglutaminase 4Transglutaminases

Identifiers

PMID20177144
PMCPMC2859330
OpenAlexW2104175080

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.