Evidence map›Paper›PMID 20176923›Full record

ArticleThe Journal of cell biology2010

Condensin complexes regulate mitotic progression and interphase chromatin structure in embryonic stem cells.

Thomas G Fazzio, Barbara Panning

Open access · hybridAbstract read
In one paragraph

Article in The Journal of cell biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 69 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. The AaFoxA factor regulates female reproduction through chromatin remodeling in the mosquito vector Aedes aegypti.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. Article
  6. Article
  7. Review
  8. Functions ofBiomedicines · 2021
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Condensin action and compaction.Current genetics · 2019
    Review
  15. Article
  16. Review
  17. Histone Code and Higher-Order Chromatin Folding: A Hypothesis.Genomics and computational biology · 2017
    Article
  18. Nesprin-2 Interacts with Condensin Component SMC2.International journal of cell biology · 2017
    Article
  19. Genome maintenance in the context of 4D chromatin condensation.Cellular and molecular life sciences : CMLS · 2016
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Thomas G FazzioBiochemistry and Biophysics Department, University of California, San Francisco, San Francisco, CA 94158, USA. thomas.fazzio@ucsf.edu
Barbara Panning
University of California, San Francisco · US

Funding

THE MOLECULAR ANALYSIS OF TUMOR VIRUSEST32CA009043 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BISHOP, J. MICHAEL · 1985 to 2009
$5.9M
Xist RNA and Regulation of Chromatin StructureR01GM063671 · NIGMS · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI PANNING, BARBARA · 2001 to 2005
$1.2M
Investigation of the Tip60-p400 complex role in embryonic stem cell self-renR01GM085186 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI PANNING, BARBARA · 2009 to 2012
$1.2M
The role of chromatin regulation in normal and cancer stem cell self-renawalK99CA140854 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FAZZIO, THOMAS G · 2009 to 2009
$110k
NCI NIH HHS 1K99CA140854-01NCI NIH HHS K99 CA140854NCI NIH HHS T32 CA009043NCI NIH HHS T32CA09043NIGMS NIH HHS R01 GM063671NIGMS NIH HHS R01 GM085186NIGMS NIH HHS R01 GM63671
6 · The paper itself

Abstract

In an RNA interference screen interrogating regulators of mouse embryonic stem (ES) cell chromatin structure, we previously identified 62 genes required for ES cell viability. Among these 62 genes were Smc2 and -4, which are core components of the two mammalian condensin complexes. In this study, we show that for Smc2 and -4, as well as an additional 49 of the 62 genes, knockdown (KD) in somatic cells had minimal effects on proliferation or viability. Upon KD, Smc2 and -4 exhibited two phenotypes that were unique to ES cells and unique among the ES cell-lethal targets: metaphase arrest and greatly enlarged interphase nuclei. Nuclear enlargement in condensin KD ES cells was caused by a defect in chromatin compaction rather than changes in DNA content. The altered compaction coincided with alterations in the abundance of several epigenetic modifications. These data reveal a unique role for condensin complexes in interphase chromatin compaction in ES cells.

Indexed as

InterphaseMitosisAdenosine TriphosphatasesAnaphaseAnimalsApoptosisCell ProliferationCell SurvivalChromatinDNA-Binding ProteinsDNA DamageEmbryo, MammalianEmbryonic Stem CellsFibroblastsGene Knockdown TechniquesHistonesAdenosine TriphosphatasesChromatincondensin complexesDNA-Binding ProteinsHistonesMultiprotein ComplexesSerineTumor Suppressor Protein p53

Identifiers

PMID20176923
PMCPMC2828918
OpenAlexW2045634739

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.