Evidence map›Paper›PMID 20176852›Full record

ArticleThe Journal of general physiology2010

Diffusion of a soluble protein, photoactivatable GFP, through a sensory cilium.

Peter D Calvert, William E Schiesser, Edward N Pugh

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of general physiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
6.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 75 citations in OpenAlex.

  1. Article
  2. Article
  3. Functional compartmentalization of photoreceptor neurons.Pflugers Archiv : European journal of physiology · 2021
    Review
  4. Structure and dynamics of photoreceptor sensory cilia.Pflugers Archiv : European journal of physiology · 2021
    Review
  5. Review
  6. Compartmentalization of Photoreceptor Sensory Cilia.Frontiers in cell and developmental biology · 2021
    Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Photoreceptor Cilia and Retinal Ciliopathies.Cold Spring Harbor perspectives in biology · 2017
    Review
  14. Review
  15. Article
  16. Article
  17. Molecular basis for photoreceptor outer segment architecture.Progress in retinal and eye research · 2016
    Review
  18. Gated entry into the ciliary compartment.Cellular and molecular life sciences : CMLS · 2016
    Review
  19. Review
  20. Applications of phototransformable fluorescent proteins for tracking the dynamics of cellular components.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Peter D CalvertDepartment of Ophthalmology, SUNY Upstate Medical University, Syracuse, NY 13210, USA. calvertp@upstate.edu
William E Schiesser
Edward N Pugh
Lehigh University · USSUNY Upstate Medical University · USUniversity of California, Davis · US

Funding

MECHANISMS OF VISUAL TRANSDUCTIONR01EY002660 · NEI · UNIVERSITY OF PENNSYLVANIA · PI PUGH, EDWARD N · 1985 to 2021
$11.4M
Supplement for ZetaSizer instrumentR01EY018421 · NEI · UPSTATE MEDICAL UNIVERSITY · PI CALVERT, PETER DEANE · 2007 to 2025
$6.2M
Translocation of soluble proteins in rod photoreceptorsR01EY016453 · NEI · UNIVERSITY OF PENNSYLVANIA · PI PUGH, EDWARD N · 2005 to 2008
$2.5M
NEI NIH HHS EY016453NEI NIH HHS EY018421NEI NIH HHS EY02660NEI NIH HHS R01 EY002660NEI NIH HHS R01 EY016453NEI NIH HHS R01 EY018421
6 · The paper itself

Abstract

Transport of proteins to and from cilia is crucial for normal cell function and survival, and interruption of transport has been implicated in degenerative and neoplastic diseases. It has been hypothesized that the ciliary axoneme and structures adjacent to and including the basal bodies of cilia impose selective barriers to the movement of proteins into and out of the cilium. To examine this hypothesis, using confocal and multiphoton microscopy we determined the mobility of the highly soluble photoactivatable green fluorescent protein (PAGFP) in the connecting cilium (CC) of live Xenopus retinal rod photoreceptors, and in the contiguous subcellular compartments bridged by the CC, the inner segment (IS) and the outer segment (OS). The estimated axial diffusion coefficients are D(CC) = 2.8 +/- 0.3, D(IS) = 5.2 +/- 0.6, and D(OS) = 0.079 +/- 0.009 microm(2) s(-1). The results establish that the CC does not pose a major barrier to protein diffusion within the rod cell. However, the results also reveal that axial diffusion in each of the rod's compartments is substantially retarded relative to aqueous solution: the axial diffusion of PAGFP was retarded approximately 18-, 32- and 1,000-fold in the IS, CC, and OS, respectively, with approximately 20-fold of the reduction in the OS attributable to tortuosity imposed by the lamellar disc membranes. Previous investigation of PAGFP diffusion in passed, spherical Chinese hamster ovary cells yielded D(CHO) = 20 microm(2) s(-1), and estimating cytoplasmic viscosity as D(aq)/D(CHO) = 4.5, the residual 3- to 10-fold reduction in PAGFP diffusion is ascribed to sub-optical resolution structures in the IS, CC, and OS compartments.

Indexed as

AlgorithmsAnimalsAnimals, Genetically ModifiedBiological TransportDiffusionFluorescent DyesGreen Fluorescent ProteinsIntracellular FluidModels, BiologicalPhotoreceptor Connecting CiliumRetinal Photoreceptor Cell Inner SegmentRetinal Rod Photoreceptor CellsXenopus laevisFluorescent DyesGreen Fluorescent Proteins

Identifiers

PMID20176852
PMCPMC2828910
OpenAlexW2142103722

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.