Evidence map›Paper›PMID 20172995›Full record

ArticleJournal of bacteriology2010

The nonmevalonate pathway of isoprenoid biosynthesis in Mycobacterium tuberculosis is essential and transcriptionally regulated by Dxs.

Amanda C Brown, Matthias Eberl, Dean C Crick, Hassan Jomaa, Tanya Parish

Abstract read
In one paragraph

Article in Journal of bacteriology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Overexpression of3 Biotech · 2021
    Article
  7. Review
  8. Article
  9. Construction and Use of TransposonFrontiers in microbiology · 2019
    Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Isoprenoid metabolism in apicomplexan parasites.Current clinical microbiology reports · 2014
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Amanda C BrownQueen Mary University of London, Barts and the London School of Medicine and Dentistry, London E12AD, United Kingdom.
Matthias Eberl
Dean C Crick
Hassan Jomaa
Tanya Parish

Funding

Biotechnology and Biological Sciences Research Council BB/D000181/1
6 · The paper itself

Abstract

Mycobacterium tuberculosis synthesizes isoprenoids via the nonmevalonate or DOXP pathway. Previous work demonstrated that three enzymes in the pathway (Dxr, IspD, and IspF) are all required for growth in vitro. We demonstrate the essentiality of the key genes dxs1 and gcpE, confirming that the pathway is of central importance and that the second homolog of the synthase (dxs2) cannot compensate for the loss of dxs1. We looked at the effect of overexpression of Dxr, Dxs1, Dxs2, and GcpE on viability and on growth in M. tuberculosis. Overexpression of dxs1 or dxs2 was inhibitory to growth, whereas overexpression of dxr or gcpE was not. Toxicity is likely to be, at least partially, due to depletion of pyruvate from the cells. Overexpression of dxs1 or gcpE resulted in increased flux through the pathway, as measured by accumulation of the metabolite 4-hydroxy-3-methyl-but-2-enyl pyrophosphate. We identified the functional translational start site and promoter region for dxr and demonstrated that it is expressed as part of a polycistronic mRNA with gcpE and two other genes. Increased expression of this operon was seen in cells overexpressing Dxs1, indicating that transcriptional control is effected by the first enzyme of the pathway via an unknown regulator.

Indexed as

Gene Expression Regulation, BacterialAmino Acid SequenceBacterial ProteinsDiphosphatesMicrobial ViabilityMolecular Sequence DataMycobacterium tuberculosisReverse Transcriptase Polymerase Chain ReactionSequence Homology, Amino AcidSignal TransductionTerpenes4-hydroxy-3-methylbut-2-enyl pyrophosphateBacterial ProteinsDiphosphatesTerpenes

Identifiers

PMID20172995
PMCPMC2863480

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.