Evidence map›Paper›PMID 20170366›Full record

ArticleThe Journal of infectious diseases2010

Functional characterization of core genes from patients with acute hepatitis C virus infection.

Xi Tang, Jessica Wagoner, Amina Negash, Michael Austin, John McLauchlan, Young S Hahn, Hugo R Rosen, Stephen J Polyak

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Xi TangDepartments of Laboratory Medicine, University of Washington, Seattle, WA 98104, USA.
Jessica Wagoner
Amina Negash
Michael Austin
John McLauchlan
Young S Hahn
Hugo R Rosen
Stephen J Polyak
University of Washington · USMedical Research Council · GBUniversity of Colorado Health · USUniversity of Virginia · US

Funding

Suppression of HCV-specific CD4+ T Cells by Core ProteinU19AI066328 · NIAID · UNIVERSITY OF COLORADO DENVER · PI ROSEN, HUGO RAMON · 2005 to 2014
$6.8M
UVA Digestive Health Research CenterP30DK067629 · NIDDK · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI PIZARRO, THERESA TORRES · 2004 to 2008
$5.6M
Impaired T cell function by HCV coreR01DK066754 · NIDDK · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI HAHN, YOUNG S. · 2004 to 2008
$1.5M
Hepatitis C Virus Induced IL-8 &Inhibition of InterferonR01DK062187 · NIDDK · UNIVERSITY OF WASHINGTON · PI POLYAK, STEPHEN J. · 2003 to 2007
$1.4M
Medical Research Council MC_U130184143Medical Research Council MC_UU_12014/1NIAID NIH HHS U19 AI066328NIDDK NIH HHS P30 DK067629NIDDK NIH HHS R01 DK062187NIDDK NIH HHS R01DK062187NIDDK NIH HHS R01 DK066754
6 · The paper itself

Abstract

backgroundThe hepatitis C virus (HCV) core protein is implicated in diverse aspects of HCV-induced pathogenesis. There is a paucity of information on core in acute hepatitis C infection.

methodsWe analyzed core gene sequences and protein functions from 13 patients acutely infected with HCV genotype 1.

resultsAlthough core isolates differed slightly between patients, core quasispecies were relatively homogeneous within each patient. In 2 of 4 patients studied temporally, core quasispecies did not change over time. Comparison with more than 2700 published core isolates indicated that amino acid changes from a prototype reference strain found in acute core isolates were present in chronically infected persons at low frequency (6.4%; range, 0%-32%). Core isolates associated with lipid droplets to similar degrees in Huh7 cells. Core diffusion in cells was not affected by nonconservative changes F130L and G161S in the lipid targeting domain of core. Core isolates inhibited interferon-stimulated response element- and nuclear factor kappaB-dependent transcription and tumor necrosis factor alpha-induced nuclear translocation of nuclear factor kappaB and were also secreted from Huh7 cells.

conclusionsThe data suggest that upon transmission, core quasispecies undergo genetic homogenization associated with amino acid changes that are rarely found in chronic infection and that, despite genetic variation, acute core isolates retain similar functions in vitro.

Indexed as

Acute DiseaseAmino Acid SequenceBase SequenceCell LineCloning, MolecularFemaleGenetic VariationHepacivirusHepatitis CHumansLipidsMaleMolecular Sequence DataPhylogenyRNA, ViralViral Core ProteinsLipidsnucleocapsid protein, Hepatitis C virusRNA, ViralViral Core Proteins

Identifiers

PMID20170366
PMCPMC2827820
OpenAlexW1975062647

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.