Evidence map›Paper›PMID 20169179›Full record

ArticlePLoS genetics2010

Transcriptional rewiring of the sex determining dmrt1 gene duplicate by transposable elements.

Amaury Herpin, Ingo Braasch, Michael Kraeussling, Cornelia Schmidt, Eva C Thoma, Shuhei Nakamura, Minoru Tanaka, Manfred Schartl

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
5.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 120 citations in OpenAlex.

  1. Review
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  13. Study of Dispersed Repeats in theInternational journal of molecular sciences · 2024
    Article
  14. Direct male development in chromosomally ZZ zebrafish.Frontiers in cell and developmental biology · 2024
    Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. The Role of Transposable Elements in Sexual Development.Frontiers in behavioral neuroscience · 2022
    Review
  20. Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Amaury HerpinUniversity of Würzburg, Physiological Chemistry I, Biozentrum, Würzburg, Germany. amaury.herpin@biozentrum.uni-wuerzburg.de
Ingo Braasch
Michael Kraeussling
Cornelia Schmidt
Eva C Thoma
Shuhei Nakamura
Minoru Tanaka
Manfred Schartl
University of Würzburg · DENational Institute for Basic Biology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Control and coordination of eukaryotic gene expression rely on transcriptional and posttranscriptional regulatory networks. Evolutionary innovations and adaptations often require rapid changes of such networks. It has long been hypothesized that transposable elements (TE) might contribute to the rewiring of regulatory interactions. More recently it emerged that TEs might bring in ready-to-use transcription factor binding sites to create alterations to the promoters by which they were captured. A process where the gene regulatory architecture is of remarkable plasticity is sex determination. While the more downstream components of the sex determination cascades are evolutionary conserved, the master regulators can switch between groups of organisms even on the interspecies level or between populations. In the medaka fish (Oryzias latipes) a duplicated copy of dmrt1, designated dmrt1bY or DMY, on the Y chromosome was shown to be the master regulator of male development, similar to Sry in mammals. We found that the dmrt1bY gene has acquired a new feedback downregulation of its expression. Additionally, the autosomal dmrt1a gene is also able to regulate transcription of its duplicated paralog by binding to a unique target Dmrt1 site nested within the dmrt1bY proximal promoter region. We could trace back this novel regulatory element to a highly conserved sequence within a new type of TE that inserted into the upstream region of dmrt1bY shortly after the duplication event. Our data provide functional evidence for a role of TEs in transcriptional network rewiring for sub- and/or neo-functionalization of duplicated genes. In the particular case of dmrt1bY, this contributed to create new hierarchies of sex-determining genes.

Indexed as

Sex Determination ProcessesTranscription, GeneticAnimalsAnimals, Genetically ModifiedBase SequenceBinding SitesCell LineDNA Transposable ElementsEvolution, MolecularGene Expression Regulation, DevelopmentalGenes, DuplicateMaleMiceMolecular Sequence DataMutagenesis, InsertionalOryziasDMRT1 proteinDNA Transposable ElementsTranscription Factors

Identifiers

PMID20169179
PMCPMC2820524
OpenAlexW2036159686

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.