Evidence map›Paper›PMID 20168990›Full record

ArticlePLoS genetics2010

A single nucleotide polymorphism within the acetyl-coenzyme A carboxylase beta gene is associated with proteinuria in patients with type 2 diabetes.

Shiro Maeda, Masa-aki Kobayashi, Shin-ichi Araki, Tetsuya Babazono, Barry I Freedman, Meredith A Bostrom, Jessica N Cooke, Masao Toyoda, Tomoya Umezono, Lise Tarnow and 21 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed, 3 pooled it
5.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 3 syntheses or guidelines pooled it, 94 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Review
  5. Review
  6. Association between protein arginineJournal of clinical & translational endocrinology · 2024
    Article
  7. Molecular mechanism of renal lipid accumulation in diabetic kidney disease.Journal of cellular and molecular medicine · 2024
    Review
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Association betweenJournal of diabetes research · 2020
    Article
  16. The Susceptibility Genes in Diabetic Nephropathy.Kidney diseases (Basel, Switzerland) · 2018
    Review
  17. Article
  18. Review
  19. Diabetic Microvascular Disease: An Endocrine Society Scientific Statement.The Journal of clinical endocrinology and metabolism · 2017
    Review
  20. Docking ofOncotarget · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors at 17 institutions in 6 countries.

Shiro MaedaLaboratory for Endocrinology and Metabolism, RIKEN Center for Genomic Medicine, Yokohama, Kanagawa, Japan. smaeda@src.riken.jp
Masa-aki Kobayashi
Shin-ichi Araki
Tetsuya Babazono
Barry I Freedman
Meredith A Bostrom
Jessica N Cooke
Masao Toyoda
Tomoya Umezono
Lise Tarnow
Torben Hansen
Peter Gaede
Anders Jorsal
Daniel P K Ng
Minoru Ikeda
Toru Yanagimoto
Tatsuhiko Tsunoda
Hiroyuki Unoki
Koichi Kawai
Masahito Imanishi
Daisuke Suzuki
Hyoung Doo Shin
Kyong Soo Park
Atsunori Kashiwagi
Yasuhiko Iwamoto
Kohei Kaku
Ryuzo Kawamori
Hans-Henrik Parving
Donald W Bowden
Oluf Pedersen
Yusuke Nakamura
Wake Forest University · USRIKEN Center for Integrative Medical Sciences · JPSteno Diabetes Center · DKTokai University · JPShiga University of Medical Science · JPShionogi (Japan) · JPTokyo Women's Medical University · JPAarhus University · DKCenter for Genomic Science · ITJuntendo University · JPKawasaki Medical School · JPNational University of Singapore · SGOsaka City General Hospital · JPRigshospitalet · DKSeoul National University · KRSogang University · KRUniversity of Southern Denmark · DK

Funding

MAPPING GENES FOR NIDDM NEPHROPATHY IN AFRICAN AMERICANSR01DK053591 · NIDDK · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI BOWDEN, DONALD W · 1998 to 2015
$5.6M
Genetic Analysis of African American Hypertensive End-Stage Renal DiseaseR01DK070941 · NIDDK · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI FREEDMAN, BARRY IRA · 2006 to 2015
$4.7M
NIDDK NIH HHS R01 DK053591NIDDK NIH HHS R01 DK070941NIDDK NIH HHS R01 DK53591NIDDK NIH HHS R01 DK70941
6 · The paper itself

Abstract

It has been suggested that genetic susceptibility plays an important role in the pathogenesis of diabetic nephropathy. A large-scale genotyping analysis of gene-based single nucleotide polymorphisms (SNPs) in Japanese patients with type 2 diabetes identified the gene encoding acetyl-coenzyme A carboxylase beta (ACACB) as a candidate for a susceptibility to diabetic nephropathy; the landmark SNP was found in the intron 18 of ACACB (rs2268388: intron 18 +4139 C > T, p = 1.4x10(-6), odds ratio = 1.61, 95% confidence interval [CI]: 1.33-1.96). The association of this SNP with diabetic nephropathy was examined in 9 independent studies (4 from Japan including the original study, one Singaporean, one Korean, and two European) with type 2 diabetes. One case-control study involving European patients with type 1 diabetes was included. The frequency of the T allele for SNP rs2268388 was consistently higher among patients with type 2 diabetes and proteinuria. A meta-analysis revealed that rs2268388 was significantly associated with proteinuria in Japanese patients with type 2 diabetes (p = 5.35 x 10(-8), odds ratio = 1.61, 95% Cl: 1.35-1.91). Rs2268388 was also associated with type 2 diabetes-associated end-stage renal disease (ESRD) in European Americans (p = 6 x 10(-4), odds ratio = 1.61, 95% Cl: 1.22-2.13). Significant association was not detected between this SNP and nephropathy in those with type 1 diabetes. A subsequent in vitro functional analysis revealed that a 29-bp DNA fragment, including rs2268388, had significant enhancer activity in cultured human renal proximal tubular epithelial cells. Fragments corresponding to the disease susceptibility allele (T) had higher enhancer activity than those of the major allele. These results suggest that ACACB is a strong candidate for conferring susceptibility for proteinuria in patients with type 2 diabetes.

Indexed as

Genetic Predisposition to DiseaseAcetyl-CoA CarboxylaseAdultAnimalsBase PairingBase SequenceCase-Control StudiesCells, CulturedCohort StudiesDiabetes Mellitus, Type 2Diabetic NephropathiesDNAEpithelial CellsGene Expression ProfilingGene Expression Regulation, EnzymologicGenome-Wide Association StudyACACB protein, humanAcetyl-CoA CarboxylaseDNA

Identifiers

PMID20168990
PMCPMC2820513
OpenAlexW2142342777

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.