Evidence map›Paper›PMID 20167072›Full record

ArticleBMC microbiology2010

Inositol monophosphate phosphatase genes of Mycobacterium tuberculosis.

Farahnaz Movahedzadeh, Paul R Wheeler, Premkumar Dinadayala, Yossef Av-Gay, Tanya Parish, Mamadou Daffé, Neil G Stoker

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 4 countries.

Farahnaz MovahedzadehDepartment of Pathology and Infectious Diseases, Royal Veterinary College, Royal College Street, London NW1 0TU, UK. movahed@uic.edu
Paul R Wheeler
Premkumar Dinadayala
Yossef Av-Gay
Tanya Parish
Mamadou Daffé
Neil G Stoker
Centre National de la Recherche Scientifique · FRRoyal Veterinary College · GBQueen Mary University of London · GBUniversity of British Columbia · CAVeterinary Medicines Directorate · GB

Funding

Wellcome Trust 073237
6 · The paper itself

Abstract

backgroundMycobacteria use inositol in phosphatidylinositol, for anchoring lipoarabinomannan (LAM), lipomannan (LM) and phosphatidylinosotol mannosides (PIMs) in the cell envelope, and for the production of mycothiol, which maintains the redox balance of the cell. Inositol is synthesized by conversion of glucose-6-phosphate to inositol-1-phosphate, followed by dephosphorylation by inositol monophosphate phosphatases (IMPases) to form myo-inositol. To gain insight into how Mycobacterium tuberculosis synthesises inositol we carried out genetic analysis of the four IMPase homologues that are present in the Mycobacterium tuberculosis genome.

resultsMutants lacking either impA (Rv1604) or suhB (Rv2701c) were isolated in the absence of exogenous inositol, and no differences in levels of PIMs, LM, LAM or mycothiol were observed. Mutagenesis of cysQ (Rv2131c) was initially unsuccessful, but was possible when a porin-like gene of Mycobacterium smegmatis was expressed, and also by gene switching in the merodiploid strain. In contrast, we could only obtain mutations in impC (Rv3137) when a second functional copy was provided in trans, even when exogenous inositol was provided. Experiments to obtain a mutant in the presence of a second copy of impC containing an active-site mutation, in the presence of porin-like gene of M. smegmatis, or in the absence of inositol 1-phosphate synthase activity, were also unsuccessful. We showed that all four genes are expressed, although at different levels, and levels of inositol phosphatase activity did not fall significantly in any of the mutants obtained.

conclusionsWe have shown that neither impA, suhB nor cysQ is solely responsible for inositol synthesis. In contrast, we show that impC is essential for mycobacterial growth under the conditions we used, and suggest it may be required in the early stages of mycothiol synthesis.

Indexed as

Amino Acid SequenceBacterial ProteinsCell ExtractsComputational BiologyGene ExpressionInositolLipopolysaccharidesMetabolic Networks and PathwaysMolecular Sequence DataMutagenesis, Site-DirectedMutationMycobacterium tuberculosisPhosphatidylinositolsPhosphoric Monoester HydrolasesSequence AlignmentBacterial ProteinsCell ExtractsInositollipoarabinomannanlipomannanLipopolysaccharidesmyo-inositol-1 (or 4)-monophosphatasephosphatidylinositol mannosidePhosphatidylinositolsPhosphoric Monoester Hydrolases

Identifiers

PMID20167072
PMCPMC2834668
OpenAlexW2008965840

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.