Evidence map›Paper›PMID 20164337›Full record

ArticleThe Journal of neuroscience : the official journal of the Society for Neuroscience2010

Alternative splicing of the histone demethylase LSD1/KDM1 contributes to the modulation of neurite morphogenesis in the mammalian nervous system.

Cristina Zibetti, Antonio Adamo, Claudia Binda, Federico Forneris, Emanuela Toffolo, Chiara Verpelli, Enrico Ginelli, Andrea Mattevi, Carlo Sala, Elena Battaglioli

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of neuroscience : the official journal of the Society for Neuroscience, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 107 papers.

0numbers the graph read from it
0cells of the map it votes in
107citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

107 citing papers in PubMed, 174 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Review
  12. Article
  13. Review
  14. Asynchronous microexon splicing ofbioRxiv : the preprint server for biology · 2024
    Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Article

47 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Cristina ZibettiDepartment of Biology and Genetics for Medical Sciences, University of Milan, 20122 Milan, Italy.
Antonio Adamo
Claudia Binda
Federico Forneris
Emanuela Toffolo
Chiara Verpelli
Enrico Ginelli
Andrea Mattevi
Carlo Sala
Elena Battaglioli
University of Milan · ITUniversity of Pavia · ITEuropean Institute of Oncology · ITNeuroscience Institute · IT

Funding

Telethon GGP06208Telethon GGP07078
6 · The paper itself

Abstract

A variety of chromatin remodeling complexes are thought to orchestrate transcriptional programs that lead neuronal precursors from earliest commitment to terminal differentiation. Here we show that mammalian neurons have a specialized chromatin remodeling enzyme arising from a neurospecific splice variant of LSD1/KDM1, histone lysine specific demethylase 1, whose demethylase activity on Lys4 of histone H3 has been related to gene repression. We found that alternative splicing of LSD1 transcript generates four full-length isoforms from combinatorial retention of two identified exons: the 4 aa exon E8a is internal to the amine oxidase domain, and its inclusion is restricted to the nervous system. Remarkably, the expression of LSD1 splice variants is dynamically regulated throughout cortical development, particularly during perinatal stages, with a progressive increase of LSD1 neurospecific isoforms over the ubiquitous ones. Notably, the same LSD1 splice dynamics can be fairly recapitulated in cultured cortical neurons. Functionally, LSD1 isoforms display in vitro a comparable demethylase activity, yet the inclusion of the sole exon E8a reduces LSD1 repressor activity on a reporter gene. Additional distinction among isoforms is supported by the knockdown of neurospecific variants in cortical neurons resulting in the inhibition of neurite maturation, whereas overexpression of the same variants enhances it. Instead, perturbation of LSD1 isoforms that are devoid of the neurospecific exon elicits no morphogenic effect. Collectively, results demonstrate that the arousal of neuronal LSD1 isoforms pacemakes early neurite morphogenesis, conferring a neurospecific function to LSD1 epigenetic activity.

Indexed as

Alternative SplicingAnimalsBrainCells, CulturedEmbryo, MammalianExonsGene Expression Regulation, DevelopmentalGenomeGreen Fluorescent ProteinsGuanylate KinasesHeLa CellsHistone DemethylasesHumansImmunoprecipitationModels, MolecularMorphogenesisCASK kinasesGreen Fluorescent ProteinsGuanylate KinasesHistone DemethylasesKDM1A protein, humanNerve Tissue ProteinsNitric Oxide Synthase Type IProtein IsoformsReceptors, GlutamateRNA, MessengerRNA, Small InterferingSAP90-PSD95 Associated Proteins

Identifiers

PMID20164337
PMCPMC6634524
OpenAlexW2070357895

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.